Gene_name Gene_id Mutated Organism Motif Len Experiment_description Database Pubmed Experiment_description Family Matrix_id Score 3IVK 3IVK no Mus_musculus GAAACA 6 X-RAY DIFFRACTION PDB 19965478 X-RAY DIFFRACTION N/A 519 1.000000** 3IVK 3IVK no Mus_musculus UGGG 4 X-RAY DIFFRACTION PDB 19965478 X-RAY DIFFRACTION N/A 574 1.000000** 4KZD 4KZD no Mus_musculus GAAAC 5 X-RAY DIFFRACTION PDB 24952597 X-RAY DIFFRACTION N/A 464 1.000000** 4KZE 4KZE no Mus_musculus GAAAC 5 X-RAY DIFFRACTION PDB 24952597 X-RAY DIFFRACTION N/A 437 1.000000** 4Q9Q 4Q9Q no Mus_musculus GAAAC 5 X-RAY DIFFRACTION PDB 24952597 X-RAY DIFFRACTION N/A 423 1.000000** 4Q9R 4Q9R no Mus_musculus CGAAAC 6 X-RAY DIFFRACTION PDB 24952597 X-RAY DIFFRACTION N/A 433 1.000000** A1CF ENSG00000148584 no Homo_sapiens UGAUCAGUAUA 11 UV cross-linking R 10669759 UV cross-linking RRM 110 1.000000** A1CF ENSG00000148584 no Homo_sapiens AUAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M001_0.6 0.126952 A1CF ENSG00000148584 no Homo_sapiens UUAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M001_0.6 0.126411 A1CF ENSG00000148584 no Homo_sapiens AUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M001_0.6 0.189114** A1CF ENSG00000148584 no Homo_sapiens UUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M001_0.6 0.188308 A1CF ENSGALG00000003765 no Gallus_gallus AUAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.029649 A1CF ENSGALG00000003765 no Gallus_gallus UUAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.04527 A1CF ENSGALG00000003765 no Gallus_gallus GUAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.075703 A1CF ENSGALG00000003765 no Gallus_gallus AUAAUUC 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.047471 A1CF ENSGALG00000003765 no Gallus_gallus UUAAUUC 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.07248 A1CF ENSGALG00000003765 no Gallus_gallus GUAAUUC 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.121206 A1CF ENSGALG00000003765 no Gallus_gallus AUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.088966 A1CF ENSGALG00000003765 no Gallus_gallus UUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.135836 A1CF ENSGALG00000003765 no Gallus_gallus GUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M244_0.6 0.227153** A2BP1 FBGN0052062 no Drosophila_melanogaster UGCAUG 6 RNAcompete C 23846655 RNAcompete RRM M118_0.6 0.742504** ACO1 ENSG00000122729 no Homo_sapiens CAGUGA 6 SELEX C 8021254 SELEX ACONITASE_C M256_0.6 0.044315 ACO1 ENSG00000122729 no Homo_sapiens CAGUGU 6 SELEX C 8021254 SELEX ACONITASE_C M256_0.6 0.033237 ACO1 ENSG00000122729 no Homo_sapiens CAGUGC 6 SELEX C 8021254 SELEX ACONITASE_C M256_0.6 0.060934** ACO1 ENSG00000122729 no Homo_sapiens CAGUGG 6 SELEX C 8021254 SELEX ACONITASE_C M256_0.6 0.013849 ADAR ENSG00000160710 no Homo_sapiens GCGC 4 X-RAY DIFFRACTION PDB 17437712 X-RAY DIFFRACTION A_DEAMIN;DSRM;Z-ALPHA 536 1.000000** ADAR ENSG00000160710 no Homo_sapiens GCGCG 5 X-RAY DIFFRACTION PDB 17437712 X-RAY DIFFRACTION A_DEAMIN;DSRM;Z-ALPHA 494 1.000000** ADARB1 ENSMUSG00000020262 no Mus_musculus CCCA 4 SOLUTION NMR PDB 20946981 SOLUTION NMR DSRM 401 1.000000** ADARB1 ENSMUSG00000020262 no Mus_musculus GGUG 4 SOLUTION NMR PDB 20946981 SOLUTION NMR DSRM 527 1.000000** ADARB1 ENSRNOG00000001227 no Rattus_norvegicus CCCA 4 SOLUTION NMR PDB 20946981 SOLUTION NMR DSRM 379 1.000000** ADARB1 ENSRNOG00000001227 no Rattus_norvegicus GUAU 4 SOLUTION NMR PDB 20946981 SOLUTION NMR DSRM 413 1.000000** AGO1 ENSG00000092847 no Homo_sapiens ACUCU 5 X-RAY DIFFRACTION PDB 15152257 X-RAY DIFFRACTION PAZ;PIWI 359 1.000000** AGO1 ENSG00000092847 no Homo_sapiens UGAGGUAGUA 10 X-RAY DIFFRACTION PDB 23746446 X-RAY DIFFRACTION PAZ;PIWI 509 1.000000** AGO1 ENSG00000092847 no Spodoptera_frugiperda AAAAAAAAA 9 X-RAY DIFFRACTION PDB 23809764 X-RAY DIFFRACTION PAZ;PIWI 560 1.000000** AGO1 ENSG00000092847 no Spodoptera_frugiperda AAUAUUAAA 9 X-RAY DIFFRACTION PDB 23746446 X-RAY DIFFRACTION PAZ;PIWI 579 1.000000** AGO2 ENSG00000123908 no Homo_sapiens AAAAAAAAA 9 X-RAY DIFFRACTION PDB 22539551 X-RAY DIFFRACTION PAZ;PIWI 414 1.000000** AGO2 ENSG00000123908 no Homo_sapiens UAAAGUGCUU 10 X-RAY DIFFRACTION PDB 22682761 X-RAY DIFFRACTION PAZ;PIWI 399 1.000000** AKAP1 ENSG00000121057 no Homo_sapiens AUAUAUAU 8 single RNA affinity purification R 17154535 single RNA affinity purification KH 97 1.000000** ANIA_04546 CADANIAG00005892 no Aspergillus_nidulans ACCCAA 6 RNAcompete C 23846655 RNAcompete KH M226_0.6 0.079121 ANIA_04546 CADANIAG00005892 no Aspergillus_nidulans ACCUAA 6 RNAcompete C 23846655 RNAcompete KH M226_0.6 0.154563** ANIA_04546 CADANIAG00005892 no Aspergillus_nidulans ACCCCA 6 RNAcompete C 23846655 RNAcompete KH M226_0.6 0.020347 ANIA_04546 CADANIAG00005892 no Aspergillus_nidulans ACCUCA 6 RNAcompete C 23846655 RNAcompete KH M226_0.6 0.039749 ANKHD1 ENSG00000131503 no Homo_sapiens AGACGAA 7 RNAcompete C 23846655 RNAcompete KH M002_0.6 0.075677 ANKHD1 ENSG00000131503 no Homo_sapiens AGACGUA 7 RNAcompete C 23846655 RNAcompete KH M002_0.6 0.219875** ANKHD1 ENSG00000131503 no Homo_sapiens AGACGAU 7 RNAcompete C 23846655 RNAcompete KH M002_0.6 0.069565 ANKHD1 ENSG00000131503 no Homo_sapiens AGACGUU 7 RNAcompete C 23846655 RNAcompete KH M002_0.6 0.202117 ARET FBGN0000114 no Drosophila_melanogaster UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M003_0.6 0.201859** ARET FBGN0000114 no Drosophila_melanogaster UUUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M003_0.6 0.079099 ARET FBGN0000114 no Drosophila_melanogaster UGUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M003_0.6 0.0704 ARET FBGN0000114 no Drosophila_melanogaster UUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M003_0.6 0.027587 ARET FBGN0000114 no Drosophila_melanogaster UUAUAUAUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** ARET FBGN0000114 no Drosophila_melanogaster UUGUAUAUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** ARET FBGN0000114 no Drosophila_melanogaster UUAUGUAUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** ARET FBGN0000114 no Drosophila_melanogaster UUGUGUAUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** ARET FBGN0000114 no Drosophila_melanogaster UUAUAUGUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** ARET FBGN0000114 no Drosophila_melanogaster UUGUAUGUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** ARET FBGN0000114 no Drosophila_melanogaster UUAUGUGUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** ARET FBGN0000114 no Drosophila_melanogaster UUGUGUGUU 9 EMSA R 7736592 EMSA RRM 86 0.124069** ASD-1 WBGENE00011279 no Caenorhabditis_elegans GUGUGC 6 SOLUTION NMR PDB PubMed ID is not available SOLUTION NMR RRM 482 1.000000** ASD-1 WBGENE00011279 no Caenorhabditis_elegans UGCAUGG 7 SOLUTION NMR PDB PubMed ID is not available SOLUTION NMR RRM 448 1.000000** ASD-1 WBGENE00011279 no Caenorhabditis_elegans AGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.160976 ASD-1 WBGENE00011279 no Caenorhabditis_elegans UGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.298191** ASD-1 WBGENE00011279 no Caenorhabditis_elegans AGCAUGU 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.047465 ASD-1 WBGENE00011279 no Caenorhabditis_elegans UGCAUGU 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.087923 ASD-1 WBGENE00011279 no Caenorhabditis_elegans AGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.050305 ASD-1 WBGENE00011279 no Caenorhabditis_elegans UGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M171_0.6 0.093184 AT1G76460 AT1G76460 no Arabidopsis_thaliana AGAGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.048347 AT1G76460 AT1G76460 no Arabidopsis_thaliana UGAGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.023579 AT1G76460 AT1G76460 no Arabidopsis_thaliana GGAGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.035159 AT1G76460 AT1G76460 no Arabidopsis_thaliana AGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.117589** AT1G76460 AT1G76460 no Arabidopsis_thaliana UGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.05735 AT1G76460 AT1G76460 no Arabidopsis_thaliana GGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.085513 AT1G76460 AT1G76460 no Arabidopsis_thaliana AGAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.013525 AT1G76460 AT1G76460 no Arabidopsis_thaliana UGAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.006596 AT1G76460 AT1G76460 no Arabidopsis_thaliana GGAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.009836 AT1G76460 AT1G76460 no Arabidopsis_thaliana AGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.032896 AT1G76460 AT1G76460 no Arabidopsis_thaliana UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.016044 AT1G76460 AT1G76460 no Arabidopsis_thaliana GGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.023922 AT1G76460 AT1G76460 no Arabidopsis_thaliana AGAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.022481 AT1G76460 AT1G76460 no Arabidopsis_thaliana UGAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.010964 AT1G76460 AT1G76460 no Arabidopsis_thaliana GGAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.016349 AT1G76460 AT1G76460 no Arabidopsis_thaliana AGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.054678 AT1G76460 AT1G76460 no Arabidopsis_thaliana UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.026667 AT1G76460 AT1G76460 no Arabidopsis_thaliana GGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M239_0.6 0.039763 B52 FBGN0004587 no Drosophila_melanogaster GGACGAA 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.016971 B52 FBGN0004587 no Drosophila_melanogaster GGAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.054428 B52 FBGN0004587 no Drosophila_melanogaster GGACGGA 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.039686 B52 FBGN0004587 no Drosophila_melanogaster GGAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.12728 B52 FBGN0004587 no Drosophila_melanogaster GGACGAC 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.015576 B52 FBGN0004587 no Drosophila_melanogaster GGAGGAC 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.049954 B52 FBGN0004587 no Drosophila_melanogaster GGACGGC 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.036423 B52 FBGN0004587 no Drosophila_melanogaster GGAGGGC 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.116817 B52 FBGN0004587 no Drosophila_melanogaster GGACGAG 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.023324 B52 FBGN0004587 no Drosophila_melanogaster GGAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.074805 B52 FBGN0004587 no Drosophila_melanogaster GGACGGG 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.054543 B52 FBGN0004587 no Drosophila_melanogaster GGAGGGG 7 RNAcompete C 23846655 RNAcompete RRM M126_0.6 0.174929** BMVLG BGIBMGA004036 no Bombyx_mori UGACAU 6 X-RAY DIFFRACTION PDB 24910301 X-RAY DIFFRACTION DEAD;HELICASE_C 455 1.000000** BRADI2G00245 BRADI2G00270 no Brachypodium_distachyon AGAA 4 X-RAY DIFFRACTION PDB 24186060 X-RAY DIFFRACTION N/A 577 1.000000** BRU-3 FBGN0264001 no Drosophila_melanogaster GUGGUGU 7 RNAcompete C 23846655 RNAcompete RRM M117_0.6 0.253834** BRU-3 FBGN0264001 no Drosophila_melanogaster UUGGUGU 7 RNAcompete C 23846655 RNAcompete RRM M117_0.6 0.107223 BRU-3 FBGN0264001 no Drosophila_melanogaster GUGUUGU 7 RNAcompete C 23846655 RNAcompete RRM M117_0.6 0.105208 BRU-3 FBGN0264001 no Drosophila_melanogaster UUGUUGU 7 RNAcompete C 23846655 RNAcompete RRM M117_0.6 0.044441 CADANIAG00004740 CADANIAG00004740 no Aspergillus_nidulans UACUAAG 7 RNAcompete C 23846655 RNAcompete RRM M241_0.6 0.08674 CADANIAG00004740 CADANIAG00004740 no Aspergillus_nidulans UACUACG 7 RNAcompete C 23846655 RNAcompete RRM M241_0.6 0.135946** CADANIAG00004740 CADANIAG00004740 no Aspergillus_nidulans UACUAAU 7 RNAcompete C 23846655 RNAcompete RRM M241_0.6 0.04354 CADANIAG00004740 CADANIAG00004740 no Aspergillus_nidulans UACUACU 7 RNAcompete C 23846655 RNAcompete RRM M241_0.6 0.06824 CELF1 ENSG00000149187 no Homo_sapiens CUGUCUG 7 UV cross-link with recombinant protein and with HeLa nuclear extract containing increasing protein concentrations. Mutation analysis. S 12649496 UV cross-linking RRM 592 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UGUGU 5 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s84 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UGUGUG 6 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s85 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UGUGUG 6 SOLUTION NMR PDB 19553194 SOLUTION NMR RRM 425 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UGUGUGU 7 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s86 0.495098** CELF1 ENSG00000149187 no Homo_sapiens UGUGUGUG 8 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s87 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UGUGUGUGU 9 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s88 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UGUGUGUGUG 10 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s89 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UGUGUGUGUGU 11 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s90 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UGUGUUGUGUGU 12 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s91 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UGUU 4 X-RAY DIFFRACTION PDB 20947024 X-RAY DIFFRACTION RRM 542 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UGUUU 5 X-RAY DIFFRACTION PDB 20947024 X-RAY DIFFRACTION RRM 436 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UGUUUGU 7 SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA. S 16938098 SELEX RRM s86 0.495098** CELF1 ENSG00000149187 no Homo_sapiens UUGUG 5 X-RAY DIFFRACTION PDB 20947024 X-RAY DIFFRACTION RRM 478 1.000000** CELF1 ENSG00000149187 no Homo_sapiens UUGUU 5 X-RAY DIFFRACTION PDB 20947024 X-RAY DIFFRACTION RRM 522 1.000000** CELF1 ENSRNOG00000010379 no Rattus_norvegicus UGCUG 5 SELEX and UV-crosslinking AEDB 11895477 UV cross-linking;SELEX RRM 326 1.000000** CELF2 ENSG00000048740 no Homo_sapiens AUGUG 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.004487 CELF2 ENSG00000048740 no Homo_sapiens AUGUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.005161 CELF2 ENSG00000048740 no Homo_sapiens AUGUU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.007843 CELF2 ENSG00000048740 no Homo_sapiens CAUCG 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.000518 CELF2 ENSG00000048740 no Homo_sapiens CGUGU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.008962 CELF2 ENSG00000048740 no Homo_sapiens GUAUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.006876 CELF2 ENSG00000048740 no Homo_sapiens GUCUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.006876 CELF2 ENSG00000048740 no Homo_sapiens GUGUG 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.004487 CELF2 ENSG00000048740 no Homo_sapiens GUGUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.020491 CELF2 ENSG00000048740 no Homo_sapiens GUUGU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.008962 CELF2 ENSG00000048740 no Homo_sapiens GUUGUU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.015184 CELF2 ENSG00000048740 no Homo_sapiens UAUGU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.010751 CELF2 ENSG00000048740 no Homo_sapiens UAUGUG 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.001592 CELF2 ENSG00000048740 no Homo_sapiens UAUGUU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.006344 CELF2 ENSG00000048740 no Homo_sapiens UGUGU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.026796 CELF2 ENSG00000048740 no Homo_sapiens UGUGU 5 UV crosslink, western blot, immunoprecipitation in HeLa nuclear extracts. S 11931771 UV cross-linking RRM 602 1.000000** CELF2 ENSG00000048740 no Homo_sapiens UGUGUG 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.001592 CELF2 ENSG00000048740 no Homo_sapiens UGUU 4 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION RRM 365 1.000000** CELF2 ENSG00000048740 no Homo_sapiens UGUUC 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.006749 CELF2 ENSG00000048740 no Homo_sapiens UGUUG 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.026796 CELF2 ENSG00000048740 no Homo_sapiens UGUUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.014251 CELF2 ENSG00000048740 no Homo_sapiens UGUUU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.046843** CELF2 ENSG00000048740 no Homo_sapiens UUGUGU 6 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s5 0.025601** CELF2 ENSG00000048740 no Homo_sapiens UUGUU 5 SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA. S 15657417 SELEX RRM s4 0.023451 CELF2 ENSG00000048740 no Homo_sapiens UUGUU 5 UV crosslink, western blot, immunoprecipitation in HeLa nuclear extracts. S 11931771 UV cross-linking RRM 603 1.000000** CELF4 ENSG00000101489 no Homo_sapiens GGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.01602 CELF4 ENSG00000101489 no Homo_sapiens UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.059537 CELF4 ENSG00000101489 no Homo_sapiens GGUGUUG 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.007378 CELF4 ENSG00000101489 no Homo_sapiens UGUGUUG 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.027421 CELF4 ENSG00000101489 no Homo_sapiens GGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.034471 CELF4 ENSG00000101489 no Homo_sapiens UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.128111** CELF4 ENSG00000101489 no Homo_sapiens GGUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.015876 CELF4 ENSG00000101489 no Homo_sapiens UGUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M004_0.6 0.059004 CELF5 ENSG00000161082 no Homo_sapiens UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M157_0.6 0.075544 CELF5 ENSG00000161082 no Homo_sapiens UGUGUUG 7 RNAcompete C 23846655 RNAcompete RRM M157_0.6 0.025251 CELF5 ENSG00000161082 no Homo_sapiens UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M157_0.6 0.216831** CELF5 ENSG00000161082 no Homo_sapiens UGUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M157_0.6 0.072478 CELF6 ENSG00000140488 no Homo_sapiens UGUGAGG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.049833 CELF6 ENSG00000140488 no Homo_sapiens UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.094426 CELF6 ENSG00000140488 no Homo_sapiens UGUGGGG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.098569 CELF6 ENSG00000140488 no Homo_sapiens UGUGAUG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.051647 CELF6 ENSG00000140488 no Homo_sapiens UGUGUUG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.097863 CELF6 ENSG00000140488 no Homo_sapiens UGUGGUG 7 RNAcompete C 23846655 RNAcompete RRM M178_0.6 0.102157** CG11360 FBGN0039920 no Drosophila_melanogaster GAGUAA 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.0522 CG11360 FBGN0039920 no Drosophila_melanogaster GAGUUA 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.017746 CG11360 FBGN0039920 no Drosophila_melanogaster GAGUGA 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.015927 CG11360 FBGN0039920 no Drosophila_melanogaster GAGUAU 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.111162** CG11360 FBGN0039920 no Drosophila_melanogaster GAGUUU 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.03779 CG11360 FBGN0039920 no Drosophila_melanogaster GAGUGU 6 RNAcompete C 23846655 RNAcompete KH M122_0.6 0.033918 CG2931 FBGN0037342 no Drosophila_melanogaster AACUAAG 7 RNAcompete C 23846655 RNAcompete RRM M138_0.6 0.387564** CG2931 FBGN0037342 no Drosophila_melanogaster UACUAAG 7 RNAcompete C 23846655 RNAcompete RRM M138_0.6 0.150324 CG2931 FBGN0037342 no Drosophila_melanogaster GACUAAG 7 RNAcompete C 23846655 RNAcompete RRM M138_0.6 0.145986 CG33714 FBGN0064117 no Drosophila_melanogaster CCGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.037923 CG33714 FBGN0064117 no Drosophila_melanogaster UCGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.026492 CG33714 FBGN0064117 no Drosophila_melanogaster GCGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.048731 CG33714 FBGN0064117 no Drosophila_melanogaster CUGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.022835 CG33714 FBGN0064117 no Drosophila_melanogaster UUGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.015952 CG33714 FBGN0064117 no Drosophila_melanogaster GUGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.029343 CG33714 FBGN0064117 no Drosophila_melanogaster CGGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.081479 CG33714 FBGN0064117 no Drosophila_melanogaster UGGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.05692 CG33714 FBGN0064117 no Drosophila_melanogaster GGGCGUG 7 RNAcompete C 23846655 RNAcompete RRM M009_0.6 0.104703** CG5213 FBGN0038345 no Drosophila_melanogaster UACUUU 6 RNAcompete C 23846655 RNAcompete RRM M010_0.6 0.586819** CG5213 FBGN0038345 no Drosophila_melanogaster UGCUUU 6 RNAcompete C 23846655 RNAcompete RRM M010_0.6 0.206303 CG7804 FBGN0036496 no Drosophila_melanogaster AGGAUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.013181 CG7804 FBGN0036496 no Drosophila_melanogaster UGGAUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.004157 CG7804 FBGN0036496 no Drosophila_melanogaster AGUAUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.014954 CG7804 FBGN0036496 no Drosophila_melanogaster UGUAUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.004716 CG7804 FBGN0036496 no Drosophila_melanogaster AGGGUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.027421 CG7804 FBGN0036496 no Drosophila_melanogaster UGGGUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.008647 CG7804 FBGN0036496 no Drosophila_melanogaster AGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.031109 CG7804 FBGN0036496 no Drosophila_melanogaster UGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.00981 CG7804 FBGN0036496 no Drosophila_melanogaster AGGAUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.025259 CG7804 FBGN0036496 no Drosophila_melanogaster UGGAUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.007965 CG7804 FBGN0036496 no Drosophila_melanogaster AGUAUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.028656 CG7804 FBGN0036496 no Drosophila_melanogaster UGUAUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.009037 CG7804 FBGN0036496 no Drosophila_melanogaster AGGGUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.052545 CG7804 FBGN0036496 no Drosophila_melanogaster UGGGUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.01657 CG7804 FBGN0036496 no Drosophila_melanogaster AGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.059613** CG7804 FBGN0036496 no Drosophila_melanogaster UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M137_0.6 0.018798 CG7903 FBGN0039730 no Drosophila_melanogaster AAUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.017944 CG7903 FBGN0039730 no Drosophila_melanogaster UAUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.036041 CG7903 FBGN0039730 no Drosophila_melanogaster CAUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.036119 CG7903 FBGN0039730 no Drosophila_melanogaster AUUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.021571 CG7903 FBGN0039730 no Drosophila_melanogaster UUUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.043326 CG7903 FBGN0039730 no Drosophila_melanogaster CUUGCGA 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.04342 CG7903 FBGN0039730 no Drosophila_melanogaster AAUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.048427 CG7903 FBGN0039730 no Drosophila_melanogaster UAUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.097265 CG7903 FBGN0039730 no Drosophila_melanogaster CAUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.097477 CG7903 FBGN0039730 no Drosophila_melanogaster AUUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.058215 CG7903 FBGN0039730 no Drosophila_melanogaster UUUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.116926 CG7903 FBGN0039730 no Drosophila_melanogaster CUUGCGG 7 RNAcompete C 23846655 RNAcompete RRM M135_0.6 0.117180** CMTR1 ENSG00000137200 no Homo_sapiens GAUC 4 X-RAY DIFFRACTION PDB 24402442 X-RAY DIFFRACTION FTSJ;G-PATCH 427 1.000000** CNOT4 ENSG00000080802 no Homo_sapiens GACAGA 6 RNAcompete C 23846655 RNAcompete RRM M147_0.6 0.569645** CNOT4 FBGN0051716 no Drosophila_melanogaster ACACAAA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.118642 CNOT4 FBGN0051716 no Drosophila_melanogaster AGACAAA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.036101 CNOT4 FBGN0051716 no Drosophila_melanogaster ACACAUA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.163154** CNOT4 FBGN0051716 no Drosophila_melanogaster AGACAUA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.049645 CNOT4 FBGN0051716 no Drosophila_melanogaster ACACACA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.081001 CNOT4 FBGN0051716 no Drosophila_melanogaster AGACACA 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.024647 CNOT4 FBGN0051716 no Drosophila_melanogaster ACACAAU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.030646 CNOT4 FBGN0051716 no Drosophila_melanogaster AGACAAU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.009325 CNOT4 FBGN0051716 no Drosophila_melanogaster ACACAUU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.042143 CNOT4 FBGN0051716 no Drosophila_melanogaster AGACAUU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.012824 CNOT4 FBGN0051716 no Drosophila_melanogaster ACACACU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.020923 CNOT4 FBGN0051716 no Drosophila_melanogaster AGACACU 7 RNAcompete C 23846655 RNAcompete RRM M008_0.6 0.006367 CPEB1 ENSG00000214575 no Homo_sapiens UUUUA 5 SOLUTION NMR PDB 24990967 SOLUTION NMR RRM 333 1.000000** CPEB1-A XB-GENE-946172 no Xenopus_laevis UUUUAU 6 EMSA R 8665866 EMSA RRM 34 1.000000** CPEB1-A XB-GENE-946172 no Xenopus_laevis UUUUUAAU 8 UV cross-linking R 1653174 UV cross-linking RRM 160 1.000000** CPEB1-A XB-GENE-946172 no Xenopus_laevis UUUUUUAUAAAG 12 UV cross-linking R 2145153 UV cross-linking RRM 108 1.000000** CPEB2 ENSG00000137449 no Homo_sapiens CAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M012_0.6 0.125733 CPEB2 ENSG00000137449 no Homo_sapiens CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M012_0.6 0.224637** CPEB2 ENSG00000137449 no Homo_sapiens CCUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M012_0.6 0.098877 CPEB4 ENSG00000113742 no Homo_sapiens CUUUA 5 SOLUTION NMR PDB 24990967 SOLUTION NMR RRM 345 1.000000** CPEB4 ENSG00000113742 no Homo_sapiens UUUUUU 6 RNAcompete C 23846655 RNAcompete RRM M149_0.6 0.654996** CPO FBGN0263995 no Drosophila_melanogaster AGCACA 6 RNAcompete C 23846655 RNAcompete RRM M125_0.6 0.271333 CPO FBGN0263995 no Drosophila_melanogaster UGCACA 6 RNAcompete C 23846655 RNAcompete RRM M125_0.6 0.338434** CSTF2 ENSG00000101811 no Homo_sapiens GUGUGUGUUG 10 NMR R 12773396 NMR RRM 60 1.000000** CSTF2 ENSG00000101811 no Homo_sapiens GUGUGUGUUUG 11 NMR R 12773396 NMR RRM 162 1.000000** CSTF2 ENSG00000101811 no Homo_sapiens GUGUGUGUUUUG 12 NMR R 12773396 NMR RRM 112 1.000000** CSTF2 ENSG00000101811 no Homo_sapiens UGUGUGUU 8 NMR R 12773396 NMR RRM 19 1.000000** CTHT_0057680 GL988045 no Chaetomium_thermophilum AAAA 4 X-RAY DIFFRACTION PDB 24071581 X-RAY DIFFRACTION N\A 351 1.000000** C_SCAFFOLD_4000008 C_SCAFFOLD_4000008 no Phytophthora_ramorum UUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M213_0.6 0.278339** C_SCAFFOLD_4000008 C_SCAFFOLD_4000008 no Phytophthora_ramorum UUGCACU 7 RNAcompete C 23846655 RNAcompete RRM M213_0.6 0.128859 C_SCAFFOLD_4000008 C_SCAFFOLD_4000008 no Phytophthora_ramorum UUGCACG 7 RNAcompete C 23846655 RNAcompete RRM M213_0.6 0.213333 DAZAP1 ENSG00000071626 no Homo_sapiens AAAAAAA 7 In vitro RNA-binding assay of Homopolymers and SDS-PAGE with recombinant protein. S 10857750 other RRM 594 1.000000** DAZAP1 ENSG00000071626 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 598 1.000000** DAZAP1 ENSG00000071626 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 597 1.000000** DAZAP1 ENSG00000071626 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 599 1.000000** DAZAP1 ENSG00000071626 no Homo_sapiens GGGGGGG 7 In vitro RNA-binding assay of Homopolymers and SDS-PAGE with recombinant protein. S 10857750 other RRM 595 1.000000** DAZAP1 ENSG00000071626 no Homo_sapiens GUAACG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 600 1.000000** DAZAP1 ENSG00000071626 no Homo_sapiens UAGGAAA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.027424 DAZAP1 ENSG00000071626 no Homo_sapiens UAGUAAA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.008178 DAZAP1 ENSG00000071626 no Homo_sapiens UAGGUAA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.09326 DAZAP1 ENSG00000071626 no Homo_sapiens UAGUUAA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.02781 DAZAP1 ENSG00000071626 no Homo_sapiens UAGGAUA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.008117 DAZAP1 ENSG00000071626 no Homo_sapiens UAGUAUA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.00242 DAZAP1 ENSG00000071626 no Homo_sapiens UAGGUUA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.027602 DAZAP1 ENSG00000071626 no Homo_sapiens UAGUUUA 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.008231 DAZAP1 ENSG00000071626 no Homo_sapiens UAGGAAG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.044268 DAZAP1 ENSG00000071626 no Homo_sapiens UAGUAAG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.013201 DAZAP1 ENSG00000071626 no Homo_sapiens UAGGUAG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.150540** DAZAP1 ENSG00000071626 no Homo_sapiens UAGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.044891 DAZAP1 ENSG00000071626 no Homo_sapiens UAGGAUG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.013102 DAZAP1 ENSG00000071626 no Homo_sapiens UAGUAUG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.003907 DAZAP1 ENSG00000071626 no Homo_sapiens UAGGUUG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.044556 DAZAP1 ENSG00000071626 no Homo_sapiens UAGUUUG 7 RNAcompete C 23846655 RNAcompete RRM M013_0.6 0.013286 DAZAP1 ENSG00000071626 no Homo_sapiens UUUUUUU 7 In vitro RNA-binding assay of Homopolymers and SDS-PAGE with recombinant protein. S 10857750 other RRM 596 1.000000** DAZAP1 ENSG00000071626 yes Homo_sapiens AGAAC 5 UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts. S 18503770 UV cross-linking;EMSA RRM 593 1.000000** DAZL ENSMUSG00000010592 no Mus_musculus GUUC 4 X-RAY DIFFRACTION PDB 22021443 X-RAY DIFFRACTION RRM 357 1.000000** DAZL ENSMUSG00000010592 no Mus_musculus GUUCU 5 X-RAY DIFFRACTION PDB 22021443 X-RAY DIFFRACTION RRM 558 1.000000** DAZL ENSMUSG00000010592 no Mus_musculus UGUUC 5 X-RAY DIFFRACTION PDB 22021443 X-RAY DIFFRACTION RRM 348 1.000000** DBP5 YOR046C no Saccharomyces_cerevisiae UUUUUU 6 X-RAY DIFFRACTION PDB 21441902 X-RAY DIFFRACTION DEAD;HELICASE_C 466 1.000000** DDX19B ENSG00000157349 no Homo_sapiens UUUUUU 6 X-RAY DIFFRACTION PDB 19219046 X-RAY DIFFRACTION DEAD;HELICASE_C 554 1.000000** DDX19B ENSG00000157349 no Homo_sapiens UUUUUUU 7 X-RAY DIFFRACTION PDB 19244245 X-RAY DIFFRACTION DEAD;HELICASE_C 332 1.000000** DDX58 ENSG00000107201 no Homo_sapiens CGUCG 5 X-RAY DIFFRACTION PDB 21947008 X-RAY DIFFRACTION DEAD;HELICASE_C;RIG_I_C 511 1.000000** DDX58 ENSG00000107201 no Homo_sapiens GCGCGC 6 X-RAY DIFFRACTION PDB 22000018 X-RAY DIFFRACTION DEAD 473 1.000000** DDX58 ENSG00000107201 no Homo_sapiens GGCG 4 X-RAY DIFFRACTION PDB 20961956 X-RAY DIFFRACTION DEAD 381 1.000000** DHX58 ENSG00000108771 no Homo_sapiens GCGCG 5 X-RAY DIFFRACTION PDB 19278996 X-RAY DIFFRACTION HELICASE_C;RIG-I_C-RD;RESIII 422 1.000000** DHX9 ENSG00000135829 no Homo_sapiens CGCG 4 X-RAY DIFFRACTION PDB 23361462 X-RAY DIFFRACTION DEAD;DSRM;HA2;HELICASE_C;OB_NTP_BIND 377 1.000000** DHX9 ENSG00000135829 no Homo_sapiens GCGC 4 X-RAY DIFFRACTION PDB 23361462 X-RAY DIFFRACTION DEAD;DSRM;HA2;HELICASE_C;OB_NTP_BIND 458 1.000000** DHX9 ENSG00000135829 no Homo_sapiens GCGCG 5 X-RAY DIFFRACTION PDB 23361462 X-RAY DIFFRACTION DEAD;DSRM;HA2;HELICASE_C;OB_NTP_BIND 435 1.000000** DIS3 YOL021C no Saccharomyces_cerevisiae AAAAAAAAA 9 X-RAY DIFFRACTION PDB 18374646 X-RAY DIFFRACTION PIN 355 1.000000** DIS3 YOL021C no Saccharomyces_cerevisiae UUUUUUU 7 X-RAY DIFFRACTION PDB 23376952 X-RAY DIFFRACTION PIN 488 1.000000** DRB1 AT1G09700 no Arabidopsis_thaliana CGAG 4 X-RAY DIFFRACTION PDB 20462493 X-RAY DIFFRACTION DSRM 532 1.000000** DRBD10 LMJF.35.2550 no Leishmania_major AGAACGA 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.150034** DRBD10 LMJF.35.2550 no Leishmania_major UGAACGA 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.128034 DRBD10 LMJF.35.2550 no Leishmania_major CGAACGA 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.07626 DRBD10 LMJF.35.2550 no Leishmania_major AGAACGC 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.137404 DRBD10 LMJF.35.2550 no Leishmania_major UGAACGC 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.117256 DRBD10 LMJF.35.2550 no Leishmania_major CGAACGC 7 RNAcompete C 23846655 RNAcompete RRM M217_0.6 0.069841 EIF-2ALPHA FBGN0261609 no Drosophila_melanogaster AGCAUG 6 RNAcompete C 23846655 RNAcompete S1 M231_0.6 0.412365** EIF-2ALPHA FBGN0261609 no Drosophila_melanogaster UGCAUG 6 RNAcompete C 23846655 RNAcompete S1 M231_0.6 0.373868 EIF4A3 ENSG00000141543 no Homo_sapiens UUUUUU 6 X-RAY DIFFRACTION PDB 16923391 X-RAY DIFFRACTION DEAD;HELICASE_C 407 1.000000** EIF4A3 ENSG00000141543 no Homo_sapiens UUUUUU 6 X-RAY DIFFRACTION PDB 16931718 X-RAY DIFFRACTION DEAD;HELICASE_C 432 1.000000** EIF4A3 ENSG00000141543 no Homo_sapiens UUUUUU 6 X-RAY DIFFRACTION PDB 19033377 X-RAY DIFFRACTION DEAD;HELICASE_C 426 1.000000** EIF4B ENSG00000063046 no Homo_sapiens CUCGGAA 7 SELEX C 8846295 SELEX RRM M290_0.6 0.021854 EIF4B ENSG00000063046 no Homo_sapiens GUCGGAA 7 SELEX C 8846295 SELEX RRM M290_0.6 0.076488 EIF4B ENSG00000063046 no Homo_sapiens CUUGGAA 7 SELEX C 8846295 SELEX RRM M290_0.6 0.03207 EIF4B ENSG00000063046 no Homo_sapiens GUUGGAA 7 SELEX C 8846295 SELEX RRM M290_0.6 0.112246** EIF4B ENSG00000063046 no Homo_sapiens CUCGGAC 7 SELEX C 8846295 SELEX RRM M290_0.6 0.007391 EIF4B ENSG00000063046 no Homo_sapiens GUCGGAC 7 SELEX C 8846295 SELEX RRM M290_0.6 0.02587 EIF4B ENSG00000063046 no Homo_sapiens CUUGGAC 7 SELEX C 8846295 SELEX RRM M290_0.6 0.010847 EIF4B ENSG00000063046 no Homo_sapiens GUUGGAC 7 SELEX C 8846295 SELEX RRM M290_0.6 0.037964 ELAV FBGN0260400 no Drosophila_melanogaster UUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.03309 ELAV FBGN0260400 no Drosophila_melanogaster UUUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.060601 ELAV FBGN0260400 no Drosophila_melanogaster UUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.102818 ELAV FBGN0260400 no Drosophila_melanogaster UUUAUUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.061764 ELAV FBGN0260400 no Drosophila_melanogaster UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.113113 ELAV FBGN0260400 no Drosophila_melanogaster UUUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M116_0.6 0.191912** ELAVL1 ENSG00000066044 no Homo_sapiens AUUU 4 X-RAY DIFFRACTION PDB 23519412 X-RAY DIFFRACTION RRM 512 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens AUUUA 5 UV crosslink, immunoblotting with HeLa nuclear extracts, EMSA with recombinant protein. S 9882309 UV cross-linking;EMSA RRM 1103 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens AUUUAUUUAUUU 12 EMSA R 12900401 EMSA RRM 164 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens AUUUU 5 X-RAY DIFFRACTION PDB 23519412 X-RAY DIFFRACTION RRM 476 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens CCCCCCC 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH RRM 1107 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens UUAUUUAUU 9 EMSA supershift, mutation analysis S 10075998 EMSA;other RRM 1105 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens UUAUUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s101 0.119681 ELAVL1 ENSG00000066044 no Homo_sapiens UUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M031_0.6 0.253225** ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M031_0.6 0.132086 ELAVL1 ENSG00000066044 no Homo_sapiens UUGUUUU 7 RNAcompete C 23846655 RNAcompete RRM M031_0.6 0.08368 ELAVL1 ENSG00000066044 no Homo_sapiens UUGUUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s101 0.119681 ELAVL1 ENSG00000066044 no Homo_sapiens UUGAUUU 7 RNAcompete C 23846655 RNAcompete RRM M127_0.6 0.098815 ELAVL1 ENSG00000066044 no Homo_sapiens UUUAUUU 7 RNAcompete C 23846655 RNAcompete RRM M127_0.6 0.046409 ELAVL1 ENSG00000066044 no Homo_sapiens UUGGUUU 7 RNAcompete C 23846655 RNAcompete RRM M127_0.6 0.200648** ELAVL1 ENSG00000066044 no Homo_sapiens UUUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M127_0.6 0.094234 ELAVL1 ENSG00000066044 no Homo_sapiens UUUAUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s101 0.119681 ELAVL1 ENSG00000066044 no Homo_sapiens UUUAUUUAUUU 11 EMSA R 12900401 EMSA RRM 84 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens UUUAUUUAUUUA 12 EMSA R 12900401 EMSA RRM 161 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens UUUGUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s101 0.119681 ELAVL1 ENSG00000066044 no Homo_sapiens UUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M112_0.6 0.022197 ELAVL1 ENSG00000066044 no Homo_sapiens UUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M112_0.6 0.071652 ELAVL1 ENSG00000066044 no Homo_sapiens UUUAUUU 7 RNAcompete C 23846655 RNAcompete RRM M112_0.6 0.052186 ELAVL1 ENSG00000066044 no Homo_sapiens UUUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M112_0.6 0.168455** ELAVL1 ENSG00000066044 no Homo_sapiens UUUU 4 X-RAY DIFFRACTION PDB 23519412 X-RAY DIFFRACTION RRM 367 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens UUUUU 5 UV crosslink, immunoblotting with HeLa nuclear extracts, EMSA with recombinant protein. S 9882309 UV cross-linking;EMSA RRM 1104 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M232_0.6 0.073589 ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M232_0.6 0.260316** ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s101 0.356674** ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUU 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH RRM 1108 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens UUUUUUU 7 UV crosslink, immunoblotting with HeLa nuclear extracts, EMSA with recombinant protein. S 9882309 UV cross-linking;EMSA RRM 1106 1.000000** ELAVL1 ENSG00000066044 no Homo_sapiens UUAGUUU 7 RNAcompete C 23846655 RNAcompete RRM M108_0.6 0.077242 ELAVL1 ENSG00000066044 no Homo_sapiens UUUGUUU 7 RNAcompete C 23846655 RNAcompete RRM M108_0.6 0.223945** ELAVL2 ENSG00000107105 no Homo_sapiens AUUUA 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.182805** ELAVL2 ENSG00000107105 no Homo_sapiens AUUUACUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.004824 ELAVL2 ENSG00000107105 no Homo_sapiens AUUUAUACU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.00033 ELAVL2 ENSG00000107105 no Homo_sapiens AUUUAUAUA 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.001909 ELAVL2 ENSG00000107105 no Homo_sapiens AUUUAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.045622 ELAVL2 ENSG00000107105 no Homo_sapiens AUUUC 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.182805** ELAVL2 ENSG00000107105 no Homo_sapiens AUUUG 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.06134 ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUC 6 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s2 0.124381** ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUUA 7 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s3 0.238178** ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUUC 7 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s3 0.07992 ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUUUUA 9 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s0 0.000557 ELAVL2 ENSG00000107105 no Homo_sapiens CUUUA 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.122072 ELAVL2 ENSG00000107105 no Homo_sapiens CUUUAAUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.002898 ELAVL2 ENSG00000107105 no Homo_sapiens CUUUC 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.122072 ELAVL2 ENSG00000107105 no Homo_sapiens CUUUCUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.000803 ELAVL2 ENSG00000107105 no Homo_sapiens CUUUUA 6 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s2 0.124381** ELAVL2 ENSG00000107105 no Homo_sapiens CUUUUU 6 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s2 0.124381** ELAVL2 ENSG00000107105 no Homo_sapiens CUUUUUA 7 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s3 0.238178** ELAVL2 ENSG00000107105 no Homo_sapiens CUUUUUG 7 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s3 0.07992 ELAVL2 ENSG00000107105 no Homo_sapiens GAAA 4 SELEX R 8668530 SELEX RRM 96 1.000000** ELAVL2 ENSG00000107105 no Homo_sapiens GUUUA 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.122072 ELAVL2 ENSG00000107105 no Homo_sapiens GUUUC 5 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s1 0.122072 ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUC 6 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s2 0.124381** ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUUA 7 SELEX of 25nt random with recombinant protein. S 8497264 SELEX RRM s3 0.119681 ELAVL2 ENSG00000107105 no Homo_sapiens AAUUUAUUUAA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens GAUUUAUUUAA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUAUUUAA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUAUUUAA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens AAUUUAUUUUA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens GAUUUAUUUUA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUAUUUUA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUAUUUUA 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens AAUUUAUUUAG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens GAUUUAUUUAG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUAUUUAG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUAUUUAG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens AAUUUAUUUUG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens GAUUUAUUUUG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens AUUUUAUUUUG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens GUUUUAUUUUG 11 SELEX C 7972035 SELEX RRM M329_0.6 0.119681** ELAVL2 ENSG00000107105 no Homo_sapiens UAUUAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.007199 ELAVL2 ENSG00000107105 no Homo_sapiens UCUUAUAUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.001083 ELAVL2 ENSG00000107105 no Homo_sapiens UUAUACUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.001584 ELAVL2 ENSG00000107105 no Homo_sapiens UUAUAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.014977 ELAVL2 ENSG00000107105 no Homo_sapiens UUGUAUUGU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.001078 ELAVL2 ENSG00000107105 no Homo_sapiens UUUAAUUUG 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.001751 ELAVL2 ENSG00000107105 no Homo_sapiens UUUAAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.01569 ELAVL2 ENSG00000107105 no Homo_sapiens UUUCAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.007884 ELAVL2 ENSG00000107105 no Homo_sapiens UUUGAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.007884 ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAAGUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.002608 ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAAUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.025968 ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAGUUA 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.002424 ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUGUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.016474 ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUUGA 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.006536 ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUUGU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.023496 ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUUUA 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.045622 ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUUUG 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.018304 ELAVL2 ENSG00000107105 no Homo_sapiens UUUUAUUUU 9 SELEX of random 25nt with purified protein. Consensus motif: RWUUUAUUUWR. S 7972035 SELEX RRM s0 0.164003** ELAVL2 ENSG00000107105 no Homo_sapiens UUUUUUAUUUU 11 UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts. S 17035636 UV cross-linking;EMSA;other RRM 1093 1.000000** ELAVL3 ENSG00000196361 no Homo_sapiens AUUUA 5 NMR R 10734193 NMR RRM 85 1.000000** ELAVL3 ENSG00000196361 no Homo_sapiens AUUUAUUUUA 10 NMR R 10734193 NMR RRM 119 1.000000** ELAVL3 ENSG00000196361 no Homo_sapiens UAUUUAUUUU 10 NMR R 10734193 NMR RRM 47 1.000000** ELAVL3 ENSMUSG00000003410 no Homo_sapiens UUUUUUU 7 ELISA and competition assays with recombinant protein S 10710437 other RRM 1094 1.000000** ELAVL3 ENSMUSG00000003410 no Mus_musculus AUUUAUUUU 9 SOLUTION NMR PDB PubMed ID is not available SOLUTION NMR RRM 567 1.000000** ELAVL4 ENSG00000162374 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay with HeLa cell extracts S 12384599 other RRM 1099 1.000000** ELAVL4 ENSG00000162374 no Homo_sapiens AUUU 4 X-RAY DIFFRACTION PDB 11175903 X-RAY DIFFRACTION RRM 424 1.000000** ELAVL4 ENSG00000162374 no Homo_sapiens AUUUAUUUAUUU 12 EMSA with recombinant protein S 12900401 EMSA RRM 1101 1.000000** ELAVL4 ENSG00000162374 no Homo_sapiens UAUUUAUUUA 10 X-RAY DIFFRACTION PDB 11175903 X-RAY DIFFRACTION RRM 353 1.000000** ELAVL4 ENSG00000162374 no Homo_sapiens UUAUUUAUUU 10 EMSA with recombinant protein S 10848602 EMSA RRM 1097 1.000000** ELAVL4 ENSG00000162374 no Homo_sapiens UUUAUUUAUUU 11 EMSA with recombinant protein S 12900401 EMSA RRM 1102 1.000000** ELAVL4 ENSG00000162374 no Homo_sapiens UUUAUUUAUUUA 12 EMSA with recombinant protein S 12900401 EMSA RRM 1100 1.000000** ELAVL4 ENSG00000162374 no Homo_sapiens UUUGUAUCUAAU 12 SELEX of 13nt random with recombinant protein. S 12900401 SELEX RRM s93 1.000000** ELAVL4 ENSG00000162374 no Homo_sapiens UUUUUUAUUUU 11 UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts. S 17035636 UV cross-linking;EMSA;other RRM 1095 1.000000** ELAVL4 ENSG00000162374 no Homo_sapiens UUUUUUU 7 ELISA and competition assays with recombinant protein S 10710437 other RRM 1096 1.000000** ELAVL4 ENSG00000162374 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with HeLa cell extracts S 12384599 other RRM 1098 1.000000** EMG1 YLR186W no Saccharomyces_cerevisiae CAACGC 6 X-RAY DIFFRACTION PDB 21087996 X-RAY DIFFRACTION EMG1 390 1.000000** EMG1 YLR186W no Saccharomyces_cerevisiae CUUC 4 X-RAY DIFFRACTION PDB 21087996 X-RAY DIFFRACTION EMG1 544 1.000000** EMG1 YLR186W no Saccharomyces_cerevisiae UCAACG 6 X-RAY DIFFRACTION PDB 21087996 X-RAY DIFFRACTION EMG1 571 1.000000** EMG1 YLR186W no Saccharomyces_cerevisiae UUCAACG 7 X-RAY DIFFRACTION PDB 21087996 X-RAY DIFFRACTION EMG1 386 1.000000** ENOX1 ENSG00000120658 no Homo_sapiens AAGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.07275 ENOX1 ENSG00000120658 no Homo_sapiens UAGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.032167 ENOX1 ENSG00000120658 no Homo_sapiens CAGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.092750** ENOX1 ENSG00000120658 no Homo_sapiens AGGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.028178 ENOX1 ENSG00000120658 no Homo_sapiens UGGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.012459 ENOX1 ENSG00000120658 no Homo_sapiens CGGACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.035924 ENOX1 ENSG00000120658 no Homo_sapiens AAUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.022019 ENOX1 ENSG00000120658 no Homo_sapiens UAUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.009736 ENOX1 ENSG00000120658 no Homo_sapiens CAUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.028073 ENOX1 ENSG00000120658 no Homo_sapiens AGUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.008529 ENOX1 ENSG00000120658 no Homo_sapiens UGUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.003771 ENOX1 ENSG00000120658 no Homo_sapiens CGUACAG 7 RNAcompete C 23846655 RNAcompete RRM M140_0.6 0.010873 ERI1 ENSG00000104626 no Homo_sapiens AGCC 4 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION SAP;RNASE_T 412 1.000000** ERI1 ENSG00000104626 no Homo_sapiens UUUCAGA 7 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION SAP;RNASE_T 517 1.000000** ESRP1 ENSG00000104413 no Homo_sapiens AGGGAU 6 NMR spectroscopy S 20526337 SOLUTION NMR RRM 601 1.000000** ESRP2 ENSG00000103067 no Homo_sapiens UGGGAAA 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.021444 ESRP2 ENSG00000103067 no Homo_sapiens UGGGGAA 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.069077 ESRP2 ENSG00000103067 no Homo_sapiens UGGGAAU 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.050884 ESRP2 ENSG00000103067 no Homo_sapiens UGGGGAU 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.163913** ESRP2 ENSG00000103067 no Homo_sapiens UGGGAAG 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.020506 ESRP2 ENSG00000103067 no Homo_sapiens UGGGGAG 7 RNAcompete C 23846655 RNAcompete RRM M141_0.6 0.066056 ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi AAUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.305845** ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi GAUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.102315 ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi AUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.094712 ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi GUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.031684 ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi AGUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.099556 ESTEXT_FGENESHHS_PG.C_730016 ESTEXT_FGENESHHS_PG.C_730016 no Naegleria_gruberi GGUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M223_0.6 0.033305 ESTEXT_GWP_GW1.C_700168 ESTEXT_GWP_GW1.C_700168 no Physcomitrella_patens AUGGAG 6 RNAcompete C 23846655 RNAcompete N\A M205_0.6 0.415919** ESTEXT_GWP_GW1.C_700168 ESTEXT_GWP_GW1.C_700168 no Physcomitrella_patens UUGGAG 6 RNAcompete C 23846655 RNAcompete N\A M205_0.6 0.18767 ETR-1 WBGENE00001340 no Caenorhabditis_elegans GGUAUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.015273 ETR-1 WBGENE00001340 no Caenorhabditis_elegans UGUAUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.019203 ETR-1 WBGENE00001340 no Caenorhabditis_elegans GUUAUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.031049 ETR-1 WBGENE00001340 no Caenorhabditis_elegans UUUAUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.039039 ETR-1 WBGENE00001340 no Caenorhabditis_elegans GGUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.029919 ETR-1 WBGENE00001340 no Caenorhabditis_elegans UGUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.037618 ETR-1 WBGENE00001340 no Caenorhabditis_elegans GUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.060825 ETR-1 WBGENE00001340 no Caenorhabditis_elegans UUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.076476 ETR-1 WBGENE00001340 no Caenorhabditis_elegans GGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.039236 ETR-1 WBGENE00001340 no Caenorhabditis_elegans UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.049333 ETR-1 WBGENE00001340 no Caenorhabditis_elegans GUUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.079767 ETR-1 WBGENE00001340 no Caenorhabditis_elegans UUUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M174_0.6 0.100292** EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUAAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.067431 EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUAAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.245377** EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.020332 EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.073987 EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUGAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.020705 EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUGAGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.075344 EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUAGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.019318 EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUAGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.070295 EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.005825 EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.021196 EXC-7 WBGENE00001368 no Caenorhabditis_elegans CUGGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.005932 EXC-7 WBGENE00001368 no Caenorhabditis_elegans UUGGGUU 7 RNAcompete C 23846655 RNAcompete RRM M014_0.6 0.021584 E_GW1.03.00.367.1 E_GW1.03.00.367.1 no Ostreococcus_tauri UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M224_0.6 0.120664 E_GW1.03.00.367.1 E_GW1.03.00.367.1 no Ostreococcus_tauri UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M224_0.6 0.265723** E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACAA 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.199775** E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACGA 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.078858 E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACAU 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.096375 E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACGU 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.038042 E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACAG 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.188218 E_GW1.09.00.326.1 E_GW1.09.00.326.1 no Ostreococcus_tauri AGAACGG 7 RNAcompete C 23846655 RNAcompete RRM M225_0.6 0.074296 E_GW1.81.40.1 E_GW1.81.40.1 no Physcomitrella_patens AACCUA 6 RNAcompete C 23846655 RNAcompete N\A M185_0.6 0.077014 E_GW1.81.40.1 E_GW1.81.40.1 no Physcomitrella_patens GACCUA 6 RNAcompete C 23846655 RNAcompete N\A M185_0.6 0.025426 E_GW1.81.40.1 E_GW1.81.40.1 no Physcomitrella_patens AACCUU 6 RNAcompete C 23846655 RNAcompete N\A M185_0.6 0.221552** E_GW1.81.40.1 E_GW1.81.40.1 no Physcomitrella_patens GACCUU 6 RNAcompete C 23846655 RNAcompete N\A M185_0.6 0.073145 F2 ENSG00000180210 no Homo_sapiens GAAG 4 X-RAY DIFFRACTION PDB 18971322 X-RAY DIFFRACTION GLA;KRINGLE;THROMBIN_LIGHT;TRYPSIN 366 1.000000** FBF-1 WBGENE00001401 no Caenorhabditis_elegans UGUGUAUAUA 10 EMSA R 19146813 EMSA PUF 77 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans AUAC 4 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION PUF 580 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans CAUGUGC 7 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION PUF 392 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans CUGUGC 6 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION PUF 371 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAA 5 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 356 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAAAAUC 9 EMSA R 19901328 EMSA PUF 35 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAAUAUA 9 EMSA R 19901328 EMSA PUF 102 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACAAUA 9 EMSA R 19901328 EMSA PUF 69 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACCAUA 9 EMSA R 19901328 EMSA PUF 14 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACCAUA 9 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 451 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACUAUA 9 EMSA R 19901328 EMSA PUF 44 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACUAUA 9 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 336 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAAAAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAUAAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACAAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAAUAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAUUAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACUAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAACAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUAUCAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUACCAUA 9 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 130 0.110865** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGC 5 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 565 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGC 5 X-RAY DIFFRACTION PDB 21372189 X-RAY DIFFRACTION PUF 409 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGCCAUA 9 EMSA R 19901328 EMSA PUF 30 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGCCUUA 9 X-RAY DIFFRACTION PDB 21372189 X-RAY DIFFRACTION PUF 431 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUCAUA 9 EMSA R 19901328 EMSA PUF 56 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUCAUC 9 EMSA R 19901328 EMSA PUF 145 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUCAUU 9 EMSA R 19901328 EMSA PUF 140 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUCAUU 9 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 443 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUUAUC 9 EMSA R 19901328 EMSA PUF 68 1.000000** FBF-2 WBGENE00001402 no Caenorhabditis_elegans UGUGUUAUC 9 X-RAY DIFFRACTION PDB 19901328 X-RAY DIFFRACTION PUF 520 1.000000** FMR1 ENSG00000102081 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 607 1.000000** FMR1 ENSG00000102081 no Homo_sapiens AAGCGGCUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.074408 FMR1 ENSG00000102081 no Homo_sapiens GAGCGAAGGGAG 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.001319 FMR1 ENSG00000102081 no Homo_sapiens GAGCGACUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.059409 FMR1 ENSG00000102081 no Homo_sapiens GAGCGACUGGUG 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.000065 FMR1 ENSG00000102081 no Homo_sapiens GAGCGGCUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.148079 FMR1 ENSG00000102081 no Homo_sapiens GCUGC 5 SOLUTION NMR PDB 21642970 SOLUTION NMR KH;FXR1P;AGENET 450 1.000000** FMR1 ENSG00000102081 no Homo_sapiens GGACUAAGGAGU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.001006 FMR1 ENSG00000102081 no Homo_sapiens GGGCAUAGGCAC 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.000011 FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAAG 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.010506 FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAGU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.015119** FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGGAG 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.006571 FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAAG 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAAG 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAGG 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAGG 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAAU 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAAU 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** FMR1 ENSG00000102081 no Homo_sapiens GGGCGAAGGAGU 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAGU 12 SELEX C 15805463 SELEX KH;FXR1P;AGENET 78 0.124069** FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAAU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.010805 FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAGU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.012962 FMR1 ENSG00000102081 no Homo_sapiens GGGCUAAGGAUU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.006492 FMR1 ENSG00000102081 no Homo_sapiens GGGCUAUGGAGU 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.001308 FMR1 ENSG00000102081 no Homo_sapiens GGGCUGAGGAUG 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.000988 FMR1 ENSG00000102081 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay using recombinant protein S 11046149 other KH 608 1.000000** FMR1 ENSG00000102081 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein S 12745094 other KH 610 1.000000** FMR1 ENSG00000102081 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein S 7688265 other KH 604 1.000000** FMR1 ENSG00000102081 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 606 1.000000** FMR1 ENSG00000102081 no Homo_sapiens GUGCGACUGGGC 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.000078 FMR1 ENSG00000102081 no Homo_sapiens GUGCGGCUGGGC 12 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s18 0.000014 FMR1 ENSG00000102081 no Homo_sapiens GAGCGACUGG 10 SELEX C 15805463 SELEX KH;FXR1P;AGENET 91 0.247531** FMR1 ENSG00000102081 no Homo_sapiens UAGCGACUGG 10 SELEX C 15805463 SELEX KH;FXR1P;AGENET 91 0.247531** FMR1 ENSG00000102081 no Homo_sapiens GAGCGGCUGG 10 SELEX C 15805463 SELEX KH;FXR1P;AGENET 91 0.247531** FMR1 ENSG00000102081 no Homo_sapiens UAGCGGCUGG 10 SELEX C 15805463 SELEX KH;FXR1P;AGENET 91 0.247531** FMR1 ENSG00000102081 no Homo_sapiens GGACAAG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M016_0.6 0.145851** FMR1 ENSG00000102081 no Homo_sapiens UGACAAG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M016_0.6 0.051135 FMR1 ENSG00000102081 no Homo_sapiens GGACAGG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M016_0.6 0.121827 FMR1 ENSG00000102081 no Homo_sapiens UGACAGG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M016_0.6 0.042713 FMR1 ENSG00000102081 no Homo_sapiens UAGCAGCUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.049646 FMR1 ENSG00000102081 no Homo_sapiens UAGCGACUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.118522 FMR1 ENSG00000102081 no Homo_sapiens UAGCGGCUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.295420** FMR1 ENSG00000102081 no Homo_sapiens UAGUGGCUGG 10 SELEX of 52nt random with recombinant protein. Consensus motifs: GGGCKAAGGARK and KAGCGRCUGG. Filter binding assays and EMSA supershift with recombinant protein. S 15805463 SELEX KH s17 0.049646 FMR1 ENSG00000102081 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay using recombinant protein S 11046149 other KH 609 1.000000** FMR1 ENSG00000102081 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with recombinant protein S 12745094 other KH 611 1.000000** FMR1 ENSG00000102081 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with recombinant protein S 7688265 other KH 605 1.000000** FMR1 FBGN0028734 no Drosophila_melanogaster AAGGACA 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.04077 FMR1 FBGN0028734 no Drosophila_melanogaster AUGGACA 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.060264 FMR1 FBGN0028734 no Drosophila_melanogaster ACGGACA 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.077375** FMR1 FBGN0028734 no Drosophila_melanogaster AAGGACG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.01633 FMR1 FBGN0028734 no Drosophila_melanogaster AUGGACG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.024139 FMR1 FBGN0028734 no Drosophila_melanogaster ACGGACG 7 RNAcompete C 23846655 RNAcompete KH;FXR1P;AGENET M015_0.6 0.030993 FNE FBGN0086675 no Drosophila_melanogaster UUGAGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.073401 FNE FBGN0086675 no Drosophila_melanogaster UUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.148661** FNE FBGN0086675 no Drosophila_melanogaster UUGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.040306 FNE FBGN0086675 no Drosophila_melanogaster UUUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.081633 FNE FBGN0086675 no Drosophila_melanogaster UUGGGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.062631 FNE FBGN0086675 no Drosophila_melanogaster UUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M115_0.6 0.12685 FOX-1 WBGENE00001484 no Caenorhabditis_elegans AGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M017_0.6 0.12105 FOX-1 WBGENE00001484 no Caenorhabditis_elegans UGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M017_0.6 0.242632** FOX-1 WBGENE00001484 no Caenorhabditis_elegans AGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M017_0.6 0.116244 FOX-1 WBGENE00001484 no Caenorhabditis_elegans UGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M017_0.6 0.232998 FRP ENSOCUG00000015960 no Oryctolagus_cuniculus AGUGCC 6 X-RAY DIFFRACTION PDB 22119729 X-RAY DIFFRACTION ACONITASE 429 1.000000** FRP ENSOCUG00000015960 no Oryctolagus_cuniculus AGUGUU 6 X-RAY DIFFRACTION PDB 17185597 X-RAY DIFFRACTION ACONITASE 537 1.000000** FRP ENSOCUG00000015960 no Oryctolagus_cuniculus AUAAUC 6 X-RAY DIFFRACTION PDB 22119729 X-RAY DIFFRACTION ACONITASE 405 1.000000** FRP ENSOCUG00000015960 no Oryctolagus_cuniculus AUCGG 5 X-RAY DIFFRACTION PDB 22119729 X-RAY DIFFRACTION ACONITASE 341 1.000000** FRP ENSOCUG00000015960 no Oryctolagus_cuniculus CGGAA 5 X-RAY DIFFRACTION PDB 17185597 X-RAY DIFFRACTION ACONITASE 378 1.000000** FUS ENSG00000089280 no Homo_sapiens AAAAAAA 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM 1058 1.000000** FUS ENSG00000089280 no Homo_sapiens CGGUGA 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.074033 FUS ENSG00000089280 no Homo_sapiens CGGUGG 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.074033 FUS ENSG00000089280 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM 1059 1.000000** FUS ENSG00000089280 no Homo_sapiens GGGGGGG 7 SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 UV cross-linking;EMSA RRM 1060 1.000000** FUS ENSG00000089280 no Homo_sapiens GGGUGA 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.147698** FUS ENSG00000089280 no Homo_sapiens GGGUGC 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.04956 FUS ENSG00000089280 no Homo_sapiens GGGUGG 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.147698** FUS ENSG00000089280 no Homo_sapiens GGGUGU 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.098629 FUS ENSG00000089280 no Homo_sapiens GGUG 4 SELEX C 11098054 SELEX ZF_RANBP;RRM M316_0.6 1.000000** FUS ENSG00000089280 no Homo_sapiens UGGUGA 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.110865 FUS ENSG00000089280 no Homo_sapiens UGGUGG 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.110865 FUS ENSG00000089280 no Homo_sapiens UGGUGU 6 SELEX of 25nt random with recombinant protein. Consensus motif: GGUG. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 SELEX RRM s31 0.074033 FUS ENSG00000089280 no Homo_sapiens UUUUUUU 7 SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts. S 11098054 UV cross-linking;EMSA RRM 1061 1.000000** FXR1 ENSG00000114416 no Homo_sapiens ACGACA 6 RNAcompete C 23846655 RNAcompete KH M152_0.6 0.145579 FXR1 ENSG00000114416 no Homo_sapiens AUGACA 6 RNAcompete C 23846655 RNAcompete KH M152_0.6 0.227677** FXR1 ENSG00000114416 no Homo_sapiens ACGACG 6 RNAcompete C 23846655 RNAcompete KH M152_0.6 0.094724 FXR1 ENSG00000114416 no Homo_sapiens AUGACG 6 RNAcompete C 23846655 RNAcompete KH M152_0.6 0.148142 FXR2 ENSG00000129245 no Homo_sapiens AGACAAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.006455 FXR2 ENSG00000129245 no Homo_sapiens UGACAAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.006324 FXR2 ENSG00000129245 no Homo_sapiens GGACAAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.020283 FXR2 ENSG00000129245 no Homo_sapiens AGACGAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.009475 FXR2 ENSG00000129245 no Homo_sapiens UGACGAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.009283 FXR2 ENSG00000129245 no Homo_sapiens GGACGAA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.029775 FXR2 ENSG00000129245 no Homo_sapiens AGACAGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.006831 FXR2 ENSG00000129245 no Homo_sapiens UGACAGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.006692 FXR2 ENSG00000129245 no Homo_sapiens GGACAGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.021466 FXR2 ENSG00000129245 no Homo_sapiens AGACGGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.010028 FXR2 ENSG00000129245 no Homo_sapiens UGACGGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.009824 FXR2 ENSG00000129245 no Homo_sapiens GGACGGA 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.031511 FXR2 ENSG00000129245 no Homo_sapiens AGACAAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.018591 FXR2 ENSG00000129245 no Homo_sapiens UGACAAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.018214 FXR2 ENSG00000129245 no Homo_sapiens GGACAAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.05842 FXR2 ENSG00000129245 no Homo_sapiens AGACGAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.027291 FXR2 ENSG00000129245 no Homo_sapiens UGACGAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.026737 FXR2 ENSG00000129245 no Homo_sapiens GGACGAG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.085759 FXR2 ENSG00000129245 no Homo_sapiens AGACAGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.019675 FXR2 ENSG00000129245 no Homo_sapiens UGACAGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.019276 FXR2 ENSG00000129245 no Homo_sapiens GGACAGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.061827 FXR2 ENSG00000129245 no Homo_sapiens AGACGGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.028883 FXR2 ENSG00000129245 no Homo_sapiens UGACGGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.028296 FXR2 ENSG00000129245 no Homo_sapiens GGACGGG 7 RNAcompete C 23846655 RNAcompete KH M020_0.6 0.090761** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACACGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCACGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUACGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUACGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCCGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCCGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCCGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCCGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACAGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCAGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUAGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUAGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCGGCAC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACACGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCACGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUACGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUACGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCCGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCCGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCCGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCCGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACAGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCAGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUAGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUAGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCGGCCC 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACACGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCACGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUACGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUACGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCCGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCCGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCCGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCCGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACAGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCAGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUAGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUAGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCGGCAG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACACGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCACGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUACGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUACGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCCGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCCGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCCGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCCGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACAGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCAGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUAGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUAGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCACCGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCCCGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCAUCGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP1 ENSG00000145907 no Homo_sapiens ACCCCUCGGCCG 12 SELEX C 11604510 SELEX RRM 33 0.015596** G3BP2 ENSG00000138757 no Homo_sapiens AGGAUAA 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.125844 G3BP2 ENSG00000138757 no Homo_sapiens AGGAUUA 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.079949 G3BP2 ENSG00000138757 no Homo_sapiens AGGAUGA 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.194538** G3BP2 ENSG00000138757 no Homo_sapiens AGGAUAG 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.058163 G3BP2 ENSG00000138757 no Homo_sapiens AGGAUUG 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.036951 G3BP2 ENSG00000138757 no Homo_sapiens AGGAUGG 7 RNAcompete C 23846655 RNAcompete RRM M021_0.6 0.089913 GLD-1 WBGENE00001595 no Caenorhabditis_elegans AUCUACUCAUAU 12 isothermal titration calorimetry R 14718919 other KH 150 1.000000** GLD-1 WBGENE00001595 no Caenorhabditis_elegans CUAAC 5 X-RAY DIFFRACTION PDB 23630077 X-RAY DIFFRACTION KH 374 1.000000** GLD-1 WBGENE00001595 no Caenorhabditis_elegans CUACUCAUAU 10 SOLUTION NMR PDB 24838563 SOLUTION NMR KH 498 1.000000** GRSF1 ENSG00000132463 no Homo_sapiens AGGGA 5 protein affinity purification R 17337441 other RRM 46 0.110865** GRSF1 ENSG00000132463 no Homo_sapiens UGGGA 5 protein affinity purification R 17337441 other RRM 46 0.110865** GRSF1 ENSG00000132463 no Homo_sapiens GGGGA 5 protein affinity purification R 17337441 other RRM 46 0.110865** GRSF1 ENSG00000132463 no Homo_sapiens AGGGU 5 protein affinity purification R 17337441 other RRM 46 0.110865** GRSF1 ENSG00000132463 no Homo_sapiens UGGGU 5 protein affinity purification R 17337441 other RRM 46 0.110865** GRSF1 ENSG00000132463 no Homo_sapiens GGGGU 5 protein affinity purification R 17337441 other RRM 46 0.110865** GRSF1 ENSG00000132463 no Homo_sapiens AGGGG 5 protein affinity purification R 17337441 other RRM 46 0.110865** GRSF1 ENSG00000132463 no Homo_sapiens UGGGG 5 protein affinity purification R 17337441 other RRM 46 0.110865** GRSF1 ENSG00000132463 no Homo_sapiens GGGGG 5 protein affinity purification R 17337441 other RRM 46 0.110865** GTF3A XB-GENE-6252591 no Xenopus_laevis CCAUAC 6 SOLUTION NMR PDB 16405997 SOLUTION NMR ZF_C2HC 553 1.000000** GTF3A XB-GENE-6252591 no Xenopus_laevis CCUGGUUAG 9 SOLUTION NMR PDB 16405997 SOLUTION NMR ZF_C2HC 463 1.000000** GTF3A XB-GENE-6252591 no Xenopus_laevis GGGUGGG 7 SELEX C 20095591 SELEX ZF_C2H2 57 1.000000** GTF3A XB-GENE-6252591 no Xenopus_laevis GGGUGGG 7 SELEX R 20095591 SELEX ZF_C2H2 2 1.000000** GW1.84.45.1 GW1.84.45.1 no Physcomitrella_patens CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M198_0.6 0.089905 GW1.84.45.1 GW1.84.45.1 no Physcomitrella_patens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M198_0.6 0.294495** HEN1 AT4G20910 no Arabidopsis_thaliana AAAG 4 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 384 1.000000** HEN1 AT4G20910 no Arabidopsis_thaliana UCAC 4 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 515 1.000000** HEN1 AT4G20910 no Arabidopsis_thaliana UUCG 4 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 376 1.000000** HEN1 AT4G20910 no Arabidopsis_thaliana UUCGCUUGCA 10 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 516 1.000000** HEN1 AT4G20910 no Arabidopsis_thaliana UUCUCUC 7 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 442 1.000000** HEN1 AT4G20910 no Arabidopsis_thaliana UUGC 4 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 486 1.000000** HEN1 AT4G20910 no Arabidopsis_thaliana UUUCUCUC 8 X-RAY DIFFRACTION PDB 19812675 X-RAY DIFFRACTION METHYLTRANSF_31 555 1.000000** HNRNPA0 ENSG00000177733 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 637 1.000000** HNRNPA0 ENSG00000177733 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 636 1.000000** HNRNPA0 ENSG00000177733 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 638 1.000000** HNRNPA0 ENSG00000177733 no Homo_sapiens AUUUA 5 RNA affinity chromatography with HeLa nuclear extract confirmed by UV crosslink S 7585247 RNA affinity chromatography/purification RRM 635 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AAAAAAA 7 Filter binding assay with purified protein S 3733753 other RRM 685 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 664 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 695 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 694 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 696 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AUAGAA 6 Competition assay, UV crosslink, immunoprecipitation with HeLa nuclear extracts, EMSA and supershift assays. S 12419255 UV cross-linking;EMSA RRM 646 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AUAGCA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 675 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AUUUA 5 EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. MALDI-TOF. S 15514164 UV cross-linking;EMSA RRM 654 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AUUUA 5 UV crosslink and immunoprecipitation with cytoplasmic lysates of lymphocytes. S 8473331 UV cross-linking RRM 665 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AUUUAA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 677 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AUUUAUUU 8 EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. MALDI-TOF. S 15514164 UV cross-linking;EMSA RRM 655 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens CAAAGAGGAA 10 RNA pull-down assay and western blot using HeLa cell extract. S 23430061 other RRM 693 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens CAGGGA 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.034041 HNRNPA1 ENSG00000135486 no Homo_sapiens CAGGGA 6 UV crosslink, immunoblot, EMSA. S 11598017 EMSA;UV cross-linking RRM 641 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens CCCCCCC 7 Filter binding assay with purified protein S 3733753 other RRM 684 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens CGUAGGUC 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other RRM 660 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens CUAGACUAGA 10 Competition assays with recombinant protein S 16990281 other RRM 649 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens CUAGACUAGA 10 RNA Affinity Chromatography Assays, SDS-PAGE in HeLa cell nuclear extracts, Nuclear Extract Depletion by high affinity RNA. SDS-PAGE, immunoblotting, RNA Footprinting Analysis. S 14703516 RNA affinity chromatography/purification RRM 647 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens CUAGACUAGA 10 RNA affinity chromatography, immunoblotting. S 10406810 RNA affinity chromatography/purification RRM 640 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens CUGAG 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 651 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens AUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.139151 HNRNPA1 ENSG00000135486 no Homo_sapiens UUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.195434** HNRNPA1 ENSG00000135486 no Homo_sapiens GUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.141183 HNRNPA1 ENSG00000135486 no Homo_sapiens AUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.047317 HNRNPA1 ENSG00000135486 no Homo_sapiens UUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.066455 HNRNPA1 ENSG00000135486 no Homo_sapiens GUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M022_0.6 0.048008 HNRNPA1 ENSG00000135486 no Homo_sapiens GAGGAAG 7 In vivo splicing using wt and mutated sequences in MDA-MB-231, HeLa, HCT-116. S 23430061 other RRM 692 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens GAGGAG 6 Competition assays with recombinant protein S 16990281 other RRM 648 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens GAGUGGUGCG 10 RNA affinity chromatography, immunoblotting. S 10406810 RNA affinity chromatography/purification RRM 688 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens GCCAAGGAGCC 11 protein affinity purification R 12415010 other RRM 183 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens GCCAAGGAGCC 11 protein affinity purification R 16548521 protein affinity purification RRM 52 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 663 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens GUUUAGA 7 UV crosslink with cytoplasmic extracts from HeLa cells. Protein identified by peptide sequencing and immunoprecipitation. S 9275159 UV cross-linking RRM 673 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGACA 6 UV crosslink, SDS-PAGE, immunoprecipitation, siRNA and Western blot. S 12833158 UV cross-linking;other RRM 662 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGA 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.034041 HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 EMSA with HeLa nuclear extract and recombinant protein. S 12060656 EMSA RRM 681 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 EMSA with recombinant protein. S 10202157 EMSA RRM 680 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 Filter binding assay, EMSA using recombinant protein S 19926721 other RRM 682 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 Immunoprecipitation, Gel shift and RNase H protection assays S 16396608 other RRM 689 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 RNase protection, immunoprecipitation in HeLa nuclear extract. S 9121425 other RRM 679 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGAGU 6 UV crosslink, immunoblot, EMSA. S 11598017 EMSA;UV cross-linking RRM 642 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 652 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGAA 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.118426 HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGAU 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.07115 HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGCA 6 UV crosslink, immunoblot, EMSA. S 11598017 EMSA;UV cross-linking RRM 643 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGCU 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.035752 HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGA 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.236262** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGA 6 UV cross-linking, EMSA S 19667073 UV cross-linking;EMSA RRM 691 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGACUUA 10 RNA affinity chromatography, immunoblotting. S 10406810 RNA affinity chromatography/purification RRM 687 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGC 6 UV crosslink, immunoprecipitation in HeLa cell nuclear extracts. S 9858549 UV cross-linking RRM 658 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGCAGGC 10 UV crosslink, immunoprecipitation in HeLa cell nuclear extracts. S 9858549 UV cross-linking RRM 659 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGU 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.141946 HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGU 6 UV cross-linking, EMSA S 19667073 UV cross-linking;EMSA RRM 690 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGA 6 RIP-chip C 17925491 RIP-chip RRM 72 0.495098** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGU 6 RIP-chip C 17925491 RIP-chip RRM 72 0.495098** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGA 6 SELEX C 7510636 SELEX RRM M271_0.6 0.393490** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGGU 6 SELEX C 7510636 SELEX RRM M271_0.6 0.32974 HNRNPA1 ENSG00000135486 no Homo_sapiens UAGGUA 6 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein and confirmed by UV-crosslink and immunoblot with HeLa nuclear extract. Consensus motif: UAGGGA/U. S 7510636 SELEX RRM s32 0.059507 HNRNPA1 ENSG00000135486 no Homo_sapiens UAGUGA 6 UV crosslink, immunoblot, EMSA. S 11598017 EMSA;UV cross-linking RRM 644 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGUGAA 7 UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot. S 11779509 UV cross-linking RRM 645 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGUUAG 7 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 653 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UUAGAUUAGA 10 UV crosslink with cytoplasmic extracts from HeLa cells. Protein identified by peptide sequencing and immunoprecipitation. S 9275159 UV cross-linking RRM 674 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UUAGGGUUAGGG 12 fluorescence methods R 15342234 other RRM 43 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UUUAUA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 676 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UUUUUUU 7 Filter binding assay with purified protein S 3733753 other RRM 683 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UUUUUUU 7 RNA affinity chromatography confirmed by UV crosslink and Western blot using HeLa nuclear extracts. S 8449401 RNA affinity chromatography/purification;UV cross-linking RRM 686 1.000000** HNRNPA1 ENSG00000135486 yes Homo_sapiens AGAAC 5 UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts. S 18503770 UV cross-linking;EMSA RRM 661 1.000000** HNRNPA1 ENSG00000135486 yes Homo_sapiens CUUAG 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 650 1.000000** HNRNPA1 ENSG00000135486 yes Homo_sapiens GUAAGUACGC 10 RNA affinity chromatography, immunoblotting. S 10406810 RNA affinity chromatography/purification RRM 639 1.000000** HNRNPA1 ENSG00000135486 yes Homo_sapiens UACGGC 6 UV crosslink, immunoprecipitation in HeLa cell nuclear extracts. S 9858549 UV cross-linking RRM 657 1.000000** HNRNPA1 ENSG00000135486 yes Homo_sapiens UAGGGU 6 RNase protection, immunoprecipitation in HeLa nuclear extract. S 9121425 other RRM 678 1.000000** HNRNPA1 ENSG00000135486 yes Homo_sapiens UCGGGC 6 UV crosslink, immunoprecipitation in HeLa cell nuclear extracts. S 9858549 UV cross-linking RRM 656 1.000000** HNRNPA1L2 ENSG00000139675 no Homo_sapiens AUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.064418 HNRNPA1L2 ENSG00000139675 no Homo_sapiens UUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.169627** HNRNPA1L2 ENSG00000139675 no Homo_sapiens GUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.096738 HNRNPA1L2 ENSG00000139675 no Homo_sapiens AUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.054246 HNRNPA1L2 ENSG00000139675 no Homo_sapiens UUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.142844 HNRNPA1L2 ENSG00000139675 no Homo_sapiens GUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M023_0.6 0.081463 HNRNPA2B1 ENSG00000122566 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 710 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 709 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 711 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens AUAGCA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 700 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens AUUUAA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 702 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens CUAGACUAGA 10 RNA affinity chromatography, immunoblotting. S 10406810 RNA affinity chromatography/purification RRM 697 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens AUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.159858 HNRNPA2B1 ENSG00000122566 no Homo_sapiens UUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.165777** HNRNPA2B1 ENSG00000122566 no Homo_sapiens GUAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.16044 HNRNPA2B1 ENSG00000122566 no Homo_sapiens AUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.04265 HNRNPA2B1 ENSG00000122566 no Homo_sapiens UUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.044229 HNRNPA2B1 ENSG00000122566 no Homo_sapiens GUAGGGU 7 RNAcompete C 23846655 RNAcompete RRM M024_0.6 0.042805 HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGAAGCC 11 UV crosslink, EMSA, IAsys resonant mirror biosensor. S 11024030 UV cross-linking;EMSA RRM 703 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGGAACC 11 UV crosslink, EMSA, IAsys resonant mirror biosensor. S 11024030 UV cross-linking;EMSA RRM 704 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGGAGCC 11 Pull-down assay, UV cross-linking, CD spectroscopy with recombinant protein S 16548521 UV cross-linking;other RRM 708 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGGAGCC 11 UV crosslink, EMSA, IAsys resonant mirror biosensor. S 11024030 UV cross-linking;EMSA RRM 705 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGGAGCC 11 protein affinity purification R 12415010 other RRM 125 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCCAAGGGGCC 11 UV crosslink, EMSA, IAsys resonant mirror biosensor. S 11024030 UV cross-linking;EMSA RRM 706 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens GCGAAGGAGCC 11 UV crosslink, EMSA, IAsys resonant mirror biosensor. S 11024030 UV cross-linking;EMSA RRM 707 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens UAGACA 6 UV crosslink, SDS-PAGE, immunoprecipitation, siRNA and Western blot. S 12833158 UV cross-linking;other RRM 699 1.000000** HNRNPA2B1 ENSG00000122566 no Homo_sapiens UUUAUA 6 RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting. S 12426391 RNA affinity chromatography/purification RRM 701 1.000000** HNRNPA2B1 ENSG00000122566 yes Homo_sapiens AGAAC 5 UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts. S 18503770 UV cross-linking;EMSA RRM 698 1.000000** HNRNPA3 ENSG00000170144 no Homo_sapiens GCCAAGGAGCC 11 protein affinity purification R 12415010 other RRM 123 1.000000** HNRNPAB ENSG00000197451 no Homo_sapiens ACAAAGACAAA 11 SELEX C 12419250 SELEX RRM 76 1.000000** HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis AAGAUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.063794 HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis UAGAUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.135342** HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis AGGAUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.023217 HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis UGGAUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.049256 HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis AAGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.017878 HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis UAGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.037929 HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis AGGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.006506 HNRNPAB ENSTNIG00000010512 no Tetraodon_nigroviridis UGGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M210_0.6 0.013804 HNRNPC ENSG00000092199 no Homo_sapiens AUUUA 5 UV crosslink and immunoprecipitation with cytoplasmic lysates of lymphocytes. S 8473331 UV cross-linking RRM 712 1.000000** HNRNPC ENSG00000092199 no Homo_sapiens GGAUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 733 1.000000** HNRNPC ENSG00000092199 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein S 7688265 other RRM 727 1.000000** HNRNPC ENSG00000092199 no Homo_sapiens GGGGGGG 7 UV cross-linking, Immunoprecipitation S 12509468 UV cross-linking RRM 722 1.000000** HNRNPC ENSG00000092199 no Homo_sapiens AUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.154023 HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.046077 HNRNPC ENSG00000092199 no Homo_sapiens CUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.050246 HNRNPC ENSG00000092199 no Homo_sapiens AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.297441** HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.088981 HNRNPC ENSG00000092199 no Homo_sapiens CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M025_0.6 0.097032 HNRNPC ENSG00000092199 no Homo_sapiens UUUUU 5 EMSA, UV crosslink, Western blot and immunoprecipitation with HeLa nuclear extracts. S 9393875 UV cross-linking;EMSA RRM 724 1.000000** HNRNPC ENSG00000092199 no Homo_sapiens UUUUU 5 UV crosslink and SDS-PAGE with recombinant protein, competition assay. S 11172920 UV cross-linking RRM 723 1.000000** HNRNPC ENSG00000092199 no Homo_sapiens UUUUUA 6 SELEX of 20nt random sequences with purified protein confirmed by filter binding assay. Consensus motif: UUUUU. S 8083209 SELEX RRM s13 0.250000** HNRNPC ENSG00000092199 no Homo_sapiens UUUUUC 6 SELEX of 20nt random sequences with purified protein confirmed by filter binding assay. Consensus motif: UUUUU. S 8083209 SELEX RRM s13 0.250000** HNRNPC ENSG00000092199 no Homo_sapiens UUUUUG 6 SELEX of 20nt random sequences with purified protein confirmed by filter binding assay. Consensus motif: UUUUU. S 8083209 SELEX RRM s13 0.250000** HNRNPC ENSG00000092199 no Homo_sapiens UUUUUU 6 SELEX of 20nt random sequences with purified protein confirmed by filter binding assay. Consensus motif: UUUUU. S 8083209 SELEX RRM s13 0.250000** HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with recombinant protein S 7688265 other RRM 726 1.000000** HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUU 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM 725 1.000000** HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUU 7 UV cross-linking, Immunoprecipitation S 12509468 UV cross-linking RRM 721 1.000000** HNRNPC ENSG00000092199 no Homo_sapiens UUUUUUU 7 UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts S 8798770 UV cross-linking RRM 720 1.000000** HNRNPC ENSG00000092199 yes Homo_sapiens GCAUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 729 1.000000** HNRNPC ENSG00000092199 yes Homo_sapiens GGAUAU 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 732 1.000000** HNRNPC ENSG00000092199 yes Homo_sapiens GGAUUC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 730 1.000000** HNRNPC ENSG00000092199 yes Homo_sapiens GGGUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 731 1.000000** HNRNPCL1 ENSG00000179172 no Homo_sapiens AUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.137704 HNRNPCL1 ENSG00000179172 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.051007 HNRNPCL1 ENSG00000179172 no Homo_sapiens CUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.045962 HNRNPCL1 ENSG00000179172 no Homo_sapiens AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.302738** HNRNPCL1 ENSG00000179172 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.112138 HNRNPCL1 ENSG00000179172 no Homo_sapiens CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M158_0.6 0.101046 HNRNPD ENSG00000138668 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay and Western blot with HeLa extracts or recombinant protein. S 16834569 other RRM 740 1.000000** HNRNPD ENSG00000138668 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 742 1.000000** HNRNPD ENSG00000138668 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 741 1.000000** HNRNPD ENSG00000138668 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 743 1.000000** HNRNPD ENSG00000138668 no Homo_sapiens AUUUA 5 UV crosslink and SDS-PAGE with recombinant protein. EMSA with recombinant protein. S 8647811 UV cross-linking;EMSA RRM 739 1.000000** HNRNPD ENSG00000138668 no Homo_sapiens AUUUAUUUA 9 UV crosslink and SDS-PAGE with recombinant protein. EMSA with recombinant protein. S 8647811 UV cross-linking;EMSA RRM 738 1.000000** HNRNPD ENSG00000138668 no Homo_sapiens UUAGAG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA RRM 735 1.000000** HNRNPD ENSG00000138668 no Homo_sapiens UUAGGA 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA RRM 736 1.000000** HNRNPD ENSG00000138668 no Homo_sapiens UUAGGG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA RRM 737 1.000000** HNRNPD ENSG00000138668 no Homo_sapiens UUAGGG 6 Filter Binding Assay of recombinant protein and Synthesized oligos. S 7673195 other RRM 744 1.000000** HNRNPDL ENSG00000152795 no Homo_sapiens AACCUUGCC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.000062 HNRNPDL ENSG00000152795 no Homo_sapiens AAUACCA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.000845 HNRNPDL ENSG00000152795 no Homo_sapiens AAUUUA 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 746 1.000000** HNRNPDL ENSG00000152795 no Homo_sapiens ACACCAGAC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.000441 HNRNPDL ENSG00000152795 no Homo_sapiens ACAUUAGCC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.007204 HNRNPDL ENSG00000152795 no Homo_sapiens ACCACGCA 8 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s44 0.010777 HNRNPDL ENSG00000152795 no Homo_sapiens ACUAACAGCA 10 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s79 1.000000** HNRNPDL ENSG00000152795 no Homo_sapiens ACUAACU 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.002521 HNRNPDL ENSG00000152795 no Homo_sapiens ACUAAGUA 8 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s44 0.005402 HNRNPDL ENSG00000152795 no Homo_sapiens ACUAGAG 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.009389 HNRNPDL ENSG00000152795 no Homo_sapiens ACUAGCC 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.037417** HNRNPDL ENSG00000152795 no Homo_sapiens ACUAGCG 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.024986 HNRNPDL ENSG00000152795 no Homo_sapiens ACUAGCU 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.024986 HNRNPDL ENSG00000152795 no Homo_sapiens ACUAGGA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.00942 HNRNPDL ENSG00000152795 no Homo_sapiens ACUGCA 6 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s35 0.029748** HNRNPDL ENSG00000152795 no Homo_sapiens ACUUUAA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.000569 HNRNPDL ENSG00000152795 no Homo_sapiens AGAUAU 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 745 1.000000** HNRNPDL ENSG00000152795 no Homo_sapiens AGUAGCC 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.004194 HNRNPDL ENSG00000152795 no Homo_sapiens AGUAGG 6 RNA affinity chromatography and SPR analysis with recombinant protein. S 24452013 RNA affinity chromatography/purification RRM 747 1.000000** HNRNPDL ENSG00000152795 no Homo_sapiens AUCUGAC 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.000064 HNRNPDL ENSG00000152795 no Homo_sapiens AUGCGCA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.000338 HNRNPDL ENSG00000152795 no Homo_sapiens AUUAGGCA 8 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s44 0.003616 HNRNPDL ENSG00000152795 no Homo_sapiens CCUUUAGGC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.000105 HNRNPDL ENSG00000152795 no Homo_sapiens GAACUAAGC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.000706 HNRNPDL ENSG00000152795 no Homo_sapiens GACUAGCA 8 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s44 0.014322** HNRNPDL ENSG00000152795 no Homo_sapiens GACUAGCG 8 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s44 0.003607 HNRNPDL ENSG00000152795 no Homo_sapiens GCACUAGAU 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.004277 HNRNPDL ENSG00000152795 no Homo_sapiens GCACUAGGC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.019171 HNRNPDL ENSG00000152795 no Homo_sapiens GCGAGCA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.002739 HNRNPDL ENSG00000152795 no Homo_sapiens GCUAGUA 7 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s36 0.00172 HNRNPDL ENSG00000152795 no Homo_sapiens GGACUAGCC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.044647** HNRNPDL ENSG00000152795 no Homo_sapiens GGACUAGCU 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.014915 HNRNPDL ENSG00000152795 no Homo_sapiens GGAGUAGCC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.012802 HNRNPDL ENSG00000152795 no Homo_sapiens GGAGUAGCU 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.004277 HNRNPDL ENSG00000152795 no Homo_sapiens GGAUUAGCC 9 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s43 0.019171 HNRNPDL ENSG00000152795 no Homo_sapiens UGUCGC 6 SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells. Consensus motifs: GGACUAGCCNNNNG, ACUAGCANNNNNACNC and CCCNCGNNACGCCUGGCCG. S 12406575 SELEX RRM s35 0.029748** HNRNPF ENSG00000169813 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM;ZF_RNPHF 817 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens AGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM;ZF_RNPHF 823 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens AGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 833 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens AGGGAAGGGA 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 838 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens AGGGAU 6 NMR spectroscopy S 20526337 SOLUTION NMR RRM;ZF_RNPHF 839 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens AGGGAU 6 NMR spectroscopy, isothermal titration calorimetry S 23275549 SOLUTION NMR RRM;ZF_RNPHF 840 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens AGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 831 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens AGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 834 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens AGGGGAGGGG 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 837 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens AGGGU 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 832 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens CGAUGGGAA 9 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 803 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens CGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM;ZF_RNPHF 807 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens CGGGA 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM;ZF_RNPHF 801 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens CGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 830 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens CGGGAUGGGGUA 12 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 804 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens CGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 829 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens CGGGGGGGGC 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 836 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens CUGGGGU 7 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 805 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens AGGGA 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** HNRNPF ENSG00000169813 no Homo_sapiens UGGGA 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** HNRNPF ENSG00000169813 no Homo_sapiens GGGGA 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** HNRNPF ENSG00000169813 no Homo_sapiens AGGGU 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** HNRNPF ENSG00000169813 no Homo_sapiens UGGGU 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** HNRNPF ENSG00000169813 no Homo_sapiens GGGGU 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** HNRNPF ENSG00000169813 no Homo_sapiens AGGGG 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** HNRNPF ENSG00000169813 no Homo_sapiens UGGGG 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** HNRNPF ENSG00000169813 no Homo_sapiens GGGGG 5 protein affinity purification R 17337441 other RRM;ZF_RNPHF 171 0.110865** HNRNPF ENSG00000169813 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM;ZF_RNPHF 816 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GGGAAUGUGGG 11 UV cross-linking, immunoprecipitation with HeLa nuclear extract and recombinant protein S 19506027 UV cross-linking;other RRM;ZF_RNPHF 815 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GGGGA 5 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 825 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM;ZF_RNPHF 818 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GGGGC 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA RRM;ZF_RNPHF 812 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GGGGG 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM;ZF_RNPHF 820 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 835 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GGGGGCUG 8 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA RRM;ZF_RNPHF 819 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM;ZF_RNPHF 821 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 7512260 other RRM;ZF_RNPHF 822 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GGGGU 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA RRM;ZF_RNPHF 810 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GGGGU 5 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 827 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens UGGGA 5 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 824 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens UGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM;ZF_RNPHF 802 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens UGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM;ZF_RNPHF 828 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens UGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA RRM;ZF_RNPHF 811 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens UGGGG 5 NMR titration using recombinant protein S 16885237 SOLUTION NMR RRM;ZF_RNPHF 826 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens UGGGGU 6 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA RRM;ZF_RNPHF 809 1.000000** HNRNPF ENSG00000169813 yes Homo_sapiens AAGGCGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other RRM;ZF_RNPHF 814 1.000000** HNRNPF ENSG00000169813 yes Homo_sapiens AAGGGGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other RRM;ZF_RNPHF 813 1.000000** HNRNPF ENSG00000169813 yes Homo_sapiens AGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM;ZF_RNPHF 806 1.000000** HNRNPF ENSG00000169813 yes Homo_sapiens AGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA RRM;ZF_RNPHF 808 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AAGAA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 887 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other ZF_RNPHF 876 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGAGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 889 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGAGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 890 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGAG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 891 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGA 5 In vivo splicing in HEK293T and HMVEC using wt or mutated constructs. S 20028692 other ZF_RNPHF 857 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 885 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 897 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGAAGGGA 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 902 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 895 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 898 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGGAGGGG 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 901 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGU 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 896 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AUUGGGUGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA ZF_RNPHF 853 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens CAGGAC 6 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 888 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens CGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification ZF_RNPHF 859 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens CGGGA 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification ZF_RNPHF 850 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens CGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 894 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens CGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 893 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens CGGGGGGGGC 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 900 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens CUGGGGGCUG 10 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 879 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGA 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGA 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGA 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGU 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGU 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGU 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** HNRNPH1 ENSG00000169045 no Homo_sapiens AGGGG 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGG 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGG 5 protein affinity purification R 17337441 other ZF_RNPHF 131 0.110865** HNRNPH1 ENSG00000169045 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other ZF_RNPHF 875 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGAAUGUGGG 11 UV cross-linking, immunoprecipitation with HeLa nuclear extract and recombinant protein S 19506027 UV cross-linking;other ZF_RNPHF 872 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGA 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 856 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 877 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGC 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 864 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGC 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 880 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 899 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGGCUG 8 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA ZF_RNPHF 878 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other ZF_RNPHF 883 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 7512260 other ZF_RNPHF 884 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGGU 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 862 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGUCGAGGGG 11 EMSA S 16396608 EMSA ZF_RNPHF 886 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGA 5 GST pull-down, mass spectrometry, Immunoprecipitation, western blotting, RNA pull-down assay, REMSA, RNA interference S 20100605 other;EMSA; ZF_RNPHF 873 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 851 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 892 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGG 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 855 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 863 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGGU 6 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 861 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGU 5 GST pull-down, mass spectrometry, Immunoprecipitation, western blotting, RNA pull-down assay, REMSA, RNA interference S 20100605 other;EMSA; ZF_RNPHF 874 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens UGGGU 5 Western blotting using HEK293T nuclear extract, immunodepletion, surface plasmon resonance S 18806275 other ZF_RNPHF 869 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens UGUGGG 6 UV crosslink, competition assays, immunoblot, immunodepletion in HeLa nuclear extracts. S 10072387 UV cross-linking ZF_RNPHF 882 1.000000** HNRNPH1 ENSG00000169045 yes Homo_sapiens AAGGCGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other ZF_RNPHF 871 1.000000** HNRNPH1 ENSG00000169045 yes Homo_sapiens AAGGGGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other ZF_RNPHF 870 1.000000** HNRNPH1 ENSG00000169045 yes Homo_sapiens AGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification ZF_RNPHF 858 1.000000** HNRNPH1 ENSG00000169045 yes Homo_sapiens AGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 860 1.000000** HNRNPH1 ENSG00000169045 yes Homo_sapiens AUCGGGCGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA ZF_RNPHF 852 1.000000** HNRNPH1 ENSG00000169045 yes Homo_sapiens CGGGC 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 854 1.000000** HNRNPH1 ENSG00000169045 yes Homo_sapiens GGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 866 1.000000** HNRNPH1 ENSG00000169045 yes Homo_sapiens GGGGU 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 867 1.000000** HNRNPH1 ENSG00000169045 yes Homo_sapiens UGGGA 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 868 1.000000** HNRNPH1 ENSG00000169045 yes Homo_sapiens UGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 865 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AAGAA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 939 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other ZF_RNPHF 928 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGAGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 941 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGAGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 942 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGAG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 943 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGA 5 In vivo splicing in HEK293T and HMVEC using wt or mutated constructs. S 20028692 other ZF_RNPHF 911 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 937 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 949 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGAAGGGA 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 954 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 947 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 950 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGGAGGGG 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 953 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGU 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 948 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AUUGGGUGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA ZF_RNPHF 906 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens CAGGAC 6 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 940 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens CGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification ZF_RNPHF 913 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens CGGGA 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification ZF_RNPHF 903 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens CGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 946 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens CGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 945 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens CGGGGGGGGC 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 952 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens CUGGGGGCUG 10 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 931 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGA 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGA 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGA 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGU 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGU 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGU 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** HNRNPH2 ENSG00000126945 no Homo_sapiens AGGGG 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGG 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGG 5 protein affinity purification R 17337441 protein affinity purification ZF_RNPHF 142 0.110865** HNRNPH2 ENSG00000126945 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other ZF_RNPHF 927 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGAAUGUGGG 11 UV cross-linking, immunoprecipitation with HeLa nuclear extract and recombinant protein S 19506027 UV cross-linking;other ZF_RNPHF 926 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGAGGG 7 RNAcompete C 23846655 RNAcompete ZF_RNPHF M151_0.6 0.198980** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGA 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 910 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 929 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGC 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 918 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGC 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 932 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGG 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 933 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 951 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGGA 6 RNA-affinity chromatography assays with recombinant protein. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 907 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGGCUG 8 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA ZF_RNPHF 930 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other ZF_RNPHF 935 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 7512260 other ZF_RNPHF 936 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGGU 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 916 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens GGGUCGAGGGG 11 EMSA S 16396608 EMSA ZF_RNPHF 938 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification ZF_RNPHF 904 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification ZF_RNPHF 944 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGG 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 909 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 917 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGGU 6 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 915 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens UGGGU 5 Western blotting using HEK293T nuclear extract, immunodepletion, surface plasmon resonance S 18806275 other ZF_RNPHF 923 1.000000** HNRNPH2 ENSG00000126945 no Homo_sapiens UGUGGG 6 UV crosslink, competition assays, immunoblot, immunodepletion in HeLa nuclear extracts. S 10072387 UV cross-linking ZF_RNPHF 934 1.000000** HNRNPH2 ENSG00000126945 yes Homo_sapiens AAGGCGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other ZF_RNPHF 925 1.000000** HNRNPH2 ENSG00000126945 yes Homo_sapiens AAGGGGAA 8 Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts. S 15828859 UV cross-linking;other ZF_RNPHF 924 1.000000** HNRNPH2 ENSG00000126945 yes Homo_sapiens AGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification ZF_RNPHF 912 1.000000** HNRNPH2 ENSG00000126945 yes Homo_sapiens AGGGG 5 Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting S 12228232 other;UV cross-linking;EMSA ZF_RNPHF 914 1.000000** HNRNPH2 ENSG00000126945 yes Homo_sapiens AUCGGGCGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA ZF_RNPHF 905 1.000000** HNRNPH2 ENSG00000126945 yes Homo_sapiens CGGGC 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other ZF_RNPHF 908 1.000000** HNRNPH2 ENSG00000126945 yes Homo_sapiens GGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 920 1.000000** HNRNPH2 ENSG00000126945 yes Homo_sapiens GGGGU 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 921 1.000000** HNRNPH2 ENSG00000126945 yes Homo_sapiens UGGGA 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 922 1.000000** HNRNPH2 ENSG00000126945 yes Homo_sapiens UGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other ZF_RNPHF 919 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 972 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGA 5 In vivo splicing in HEK293T and HMVEC using wt or mutated constructs. S 20028692 other RRM 962 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM 978 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 983 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGAAGGGA 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 988 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 981 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 984 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGGAGGGG 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 987 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGU 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 982 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens AUUGGGUGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA RRM 958 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens CGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 964 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens CGGGA 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM 955 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens CGGGA 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 980 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens CGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 990 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens CGGGGGGGGC 10 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 986 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGA 5 protein affinity purification R 17337441 other RRM 182 0.110865** HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGA 5 protein affinity purification R 17337441 other RRM 182 0.110865** HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGA 5 protein affinity purification R 17337441 other RRM 182 0.110865** HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGU 5 protein affinity purification R 17337441 other RRM 182 0.110865** HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGU 5 protein affinity purification R 17337441 other RRM 182 0.110865** HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGU 5 protein affinity purification R 17337441 other RRM 182 0.110865** HNRNPH3 ENSG00000096746 no Homo_sapiens AGGGG 5 protein affinity purification R 17337441 other RRM 182 0.110865** HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGG 5 protein affinity purification R 17337441 other RRM 182 0.110865** HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGG 5 protein affinity purification R 17337441 other RRM 182 0.110865** HNRNPH3 ENSG00000096746 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 971 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens GGGAAUGUGGG 11 UV cross-linking, immunoprecipitation with HeLa nuclear extract and recombinant protein S 19506027 UV cross-linking;other RRM 970 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGA 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other RRM 961 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM 973 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGG 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 985 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGGCUG 8 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA RRM 974 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM 976 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 7512260 other RRM 977 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens GGGUCGAGGGG 11 EMSA S 16396608 EMSA RRM 979 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGA 5 RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography. S 11571276 other;RNA affinity chromatography/purification RRM 956 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGC 5 RNA-affinity chromatography assays with HeLa nuclear extract and immunoblotting. S 17337441 RNA affinity chromatography/purification RRM 989 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGG 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other RRM 960 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens UGGGU 5 Western blotting using HEK293T nuclear extract, immunodepletion, surface plasmon resonance S 18806275 other RRM 969 1.000000** HNRNPH3 ENSG00000096746 no Homo_sapiens UGUGGG 6 UV crosslink, competition assays, immunoblot, immunodepletion in HeLa nuclear extracts. S 10072387 UV cross-linking RRM 975 1.000000** HNRNPH3 ENSG00000096746 yes Homo_sapiens AGGGA 5 Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract. S 19404736 other;UV cross-linking;RNA affinity chromatography/purification RRM 963 1.000000** HNRNPH3 ENSG00000096746 yes Homo_sapiens AUCGGGCGU 9 EMSA, UV crosslink, immunoprecipitation and immunoblot. S 11526107 UV cross-linking;EMSA RRM 957 1.000000** HNRNPH3 ENSG00000096746 yes Homo_sapiens CGGGC 5 EMSA, UV cross-linking, immunoprecipitation and Western blotting with HEK293T nuclear extract S 20028692 other RRM 959 1.000000** HNRNPH3 ENSG00000096746 yes Homo_sapiens GGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other RRM 966 1.000000** HNRNPH3 ENSG00000096746 yes Homo_sapiens GGGGU 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other RRM 967 1.000000** HNRNPH3 ENSG00000096746 yes Homo_sapiens UGGGA 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other RRM 968 1.000000** HNRNPH3 ENSG00000096746 yes Homo_sapiens UGGGG 5 UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs. S 12732620 UV cross-linking;other RRM 965 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 1038 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens ACCCAA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.085043** HNRNPK ENSG00000165119 no Homo_sapiens ACCCAU 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.070893 HNRNPK ENSG00000165119 no Homo_sapiens ACCCCAA 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.055325 HNRNPK ENSG00000165119 no Homo_sapiens ACCCCCAA 8 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s14 0.219670** HNRNPK ENSG00000165119 no Homo_sapiens ACCCCCAC 8 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s14 0.219670** HNRNPK ENSG00000165119 no Homo_sapiens ACCCCCCCCCUA 12 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s61 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens ACCCGA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.042575 HNRNPK ENSG00000165119 no Homo_sapiens ACCCGC 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.021323 HNRNPK ENSG00000165119 no Homo_sapiens ACCCGU 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.035491 HNRNPK ENSG00000165119 no Homo_sapiens ACCCUU 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.02664 HNRNPK ENSG00000165119 no Homo_sapiens CCAAACC 7 RNAcompete C 23846655 RNAcompete KH M026_0.6 0.061794 HNRNPK ENSG00000165119 no Homo_sapiens CCAUACC 7 RNAcompete C 23846655 RNAcompete KH M026_0.6 0.029808 HNRNPK ENSG00000165119 no Homo_sapiens CCAACCC 7 RNAcompete C 23846655 RNAcompete KH M026_0.6 0.099266** HNRNPK ENSG00000165119 no Homo_sapiens CCAUCCC 7 RNAcompete C 23846655 RNAcompete KH M026_0.6 0.047884 HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 EMSA, UV cross-linking, competition assays, western blot, pull-down assay and mass spectrometry with AGS cytoplasmic extracts. S 17928403 UV cross-linking;EMSA KH 1045 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay and Western blot with HeLa extracts or recombinant protein. S 16834569 other KH 1044 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay in HeLa nuclear extract S 11867641 other KH 1043 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 1036 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay with recombinat protein S 10523673 other KH 1041 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other KH 1026 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 UV cross-linking. Cell-free translation of different mRNAs. S 9160751 UV cross-linking KH 1040 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens CCCCCCC 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 1034 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens GCCCAA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.042592 HNRNPK ENSG00000165119 no Homo_sapiens GCCCAC 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.021332 HNRNPK ENSG00000165119 no Homo_sapiens GCCCAG 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.007158 HNRNPK ENSG00000165119 no Homo_sapiens GCCCCCCUA 9 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s62 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens GCCCCUA 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.055325 HNRNPK ENSG00000165119 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 1037 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinat protein S 10523673 other KH 1042 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens GGGGGGG 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 1035 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens UCCCAA 6 EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. S 15514164 UV cross-linking;EMSA KH 1027 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens UCCCAA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.085043** HNRNPK ENSG00000165119 no Homo_sapiens UCCCAC 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.042592 HNRNPK ENSG00000165119 no Homo_sapiens UCCCAU 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.070893 HNRNPK ENSG00000165119 no Homo_sapiens UCCCCAA 7 NMR R 16854432 NMR KH 121 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens UCCCCAA 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.219657** HNRNPK ENSG00000165119 no Homo_sapiens UCCCCAA 7 UV cross-linking, Chemical shift mapping (NMR) with recombinant protein. S 16854432 UV cross-linking;SOLUTION NMR KH 1031 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens UCCCCAU 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.110102 HNRNPK ENSG00000165119 no Homo_sapiens UCCCCCAA 8 EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. S 15514164 UV cross-linking;EMSA KH 1029 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens UCCCCCAU 8 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s14 0.110381 HNRNPK ENSG00000165119 no Homo_sapiens UCCCCCCAA 9 EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. S 15514164 UV cross-linking;EMSA KH 1028 1.000000** HNRNPK ENSG00000165119 no Homo_sapiens UCCCCUA 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.219657** HNRNPK ENSG00000165119 no Homo_sapiens UCCCCUU 7 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s16 0.110102 HNRNPK ENSG00000165119 no Homo_sapiens UCCCGA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.042575 HNRNPK ENSG00000165119 no Homo_sapiens UCCCUA 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.031957 HNRNPK ENSG00000165119 no Homo_sapiens UCCCUU 6 SELEX of 50nt random with recombinant protein. Consensus motif: u/aCCCCCu/a. Winners confirmed by EMSA with recombinant protein. S 11278705 SELEX KH s15 0.02664 HNRNPK ENSG00000165119 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 1039 1.000000** HNRNPL ENSG00000104824 no Homo_sapiens AACA 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.034051 HNRNPL ENSG00000104824 no Homo_sapiens ACAA 4 Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 UV cross-linking RRM 1046 1.000000** HNRNPL ENSG00000104824 no Homo_sapiens ACAC 4 SELEX of 20nt random with recombinant protein. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.029062 HNRNPL ENSG00000104824 no Homo_sapiens ACACAAA 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.093143** HNRNPL ENSG00000104824 no Homo_sapiens ACACGAA 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.076333 HNRNPL ENSG00000104824 no Homo_sapiens ACACAAC 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.06981 HNRNPL ENSG00000104824 no Homo_sapiens ACACGAC 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.057211 HNRNPL ENSG00000104824 no Homo_sapiens ACACAAG 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.071439 HNRNPL ENSG00000104824 no Homo_sapiens ACACGAG 7 RNAcompete C 23846655 RNAcompete RRM M089_0.6 0.058546 HNRNPL ENSG00000104824 no Homo_sapiens ACAU 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.00732 HNRNPL ENSG00000104824 no Homo_sapiens AAACAAA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.016455 HNRNPL ENSG00000104824 no Homo_sapiens ACACAAA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.058972 HNRNPL ENSG00000104824 no Homo_sapiens AAAUAAA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.005076 HNRNPL ENSG00000104824 no Homo_sapiens ACAUAAA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.018191 HNRNPL ENSG00000104824 no Homo_sapiens AAACACA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.042258 HNRNPL ENSG00000104824 no Homo_sapiens ACACACA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.151448** HNRNPL ENSG00000104824 no Homo_sapiens AAAUACA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.013035 HNRNPL ENSG00000104824 no Homo_sapiens ACAUACA 7 RNAcompete C 23846655 RNAcompete RRM M027_0.6 0.046717 HNRNPL ENSG00000104824 no Homo_sapiens CACA 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.045364 HNRNPL ENSG00000104824 no Homo_sapiens CACACCACA 9 Mutational analysis, pulldown, western blot in HeLa nuclear extract S 22402488 other RRM 1052 1.000000** HNRNPL ENSG00000104824 no Homo_sapiens CACC 4 Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 UV cross-linking RRM 1051 1.000000** HNRNPL ENSG00000104824 no Homo_sapiens CACC 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.060435** HNRNPL ENSG00000104824 no Homo_sapiens CACG 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.015222 HNRNPL ENSG00000104824 no Homo_sapiens CCAC 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.038717 HNRNPL ENSG00000104824 no Homo_sapiens GCAC 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.009752 HNRNPL ENSG00000104824 no Homo_sapiens UACA 4 SELEX of 20nt random with recombinant protein. Consensus motif: ACACACAC. Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. S 15889141 SELEX RRM s38 0.011426 HNRNPLL ENSG00000143889 no Homo_sapiens CACACCACA 9 Mutational analysis, pulldown, western blot in HeLa nuclear extract S 22402488 other RRM 1054 1.000000** HNRNPLL ENSG00000143889 no Homo_sapiens CACCGCA 7 UV cross-linking R 18719244 UV cross-linking RRM 169 0.495098** HNRNPLL ENSG00000143889 no Homo_sapiens CACUGCA 7 UV cross-linking R 18719244 UV cross-linking RRM 169 0.495098** HNRNPLL ENSG00000143889 no Homo_sapiens ACAAACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.091061 HNRNPLL ENSG00000143889 no Homo_sapiens GCAAACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.033675 HNRNPLL ENSG00000143889 no Homo_sapiens ACAUACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.099041 HNRNPLL ENSG00000143889 no Homo_sapiens GCAUACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.036627 HNRNPLL ENSG00000143889 no Homo_sapiens ACACACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.255456** HNRNPLL ENSG00000143889 no Homo_sapiens GCACACA 7 RNAcompete C 23846655 RNAcompete RRM M169_0.6 0.094471 HNRNPLL ENSG00000143889 yes Homo_sapiens CAGACGACA 9 Mutational analysis, pulldown, western blot in HeLa nuclear extract S 22402488 other RRM 1053 1.000000** HNRNPM ENSG00000099783 no Homo_sapiens GAAGGAA 7 In vivo splicing with deletion and mutation analysis. RNA pulldown assay in HeLa nuclear extracts. S 24533984 other RRM;HNRNP_M 1056 1.000000** HNRNPM ENSG00000099783 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other RRM;HNRNP_M 1055 1.000000** HNRNPR ENSGALG00000000814 no Gallus_gallus AAAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.003049 HNRNPR ENSGALG00000000814 no Gallus_gallus CAAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.009335 HNRNPR ENSGALG00000000814 no Gallus_gallus ACAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.006214 HNRNPR ENSGALG00000000814 no Gallus_gallus CCAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.019025 HNRNPR ENSGALG00000000814 no Gallus_gallus AAAAAUC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.008523 HNRNPR ENSGALG00000000814 no Gallus_gallus CAAAAUC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.026095 HNRNPR ENSGALG00000000814 no Gallus_gallus ACAAAUC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.017369 HNRNPR ENSGALG00000000814 no Gallus_gallus CCAAAUC 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.05318 HNRNPR ENSGALG00000000814 no Gallus_gallus AAAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.008334 HNRNPR ENSGALG00000000814 no Gallus_gallus CAAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.025518 HNRNPR ENSGALG00000000814 no Gallus_gallus ACAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.016985 HNRNPR ENSGALG00000000814 no Gallus_gallus CCAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.052004 HNRNPR ENSGALG00000000814 no Gallus_gallus AAAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.023297 HNRNPR ENSGALG00000000814 no Gallus_gallus CAAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.07133 HNRNPR ENSGALG00000000814 no Gallus_gallus ACAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.047477 HNRNPR ENSGALG00000000814 no Gallus_gallus CCAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M242_0.6 0.145366** HNRNPR ENSXETG00000007102 no Xenopus_tropicalis AAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M243_0.6 0.188455** HNRNPR ENSXETG00000007102 no Xenopus_tropicalis CAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M243_0.6 0.118375 HNRNPU ENSG00000153187 no Homo_sapiens AAAAAAA 7 Filter Binding Assay with purified protein. S 8174554 other SAP;SPRY 1070 1.000000** HNRNPU ENSG00000153187 no Homo_sapiens AAAAAAA 7 SDS-PAGE of ribonucleotide homopolymers with recombinant protein S 1628625 other SAP;SPRY 1067 1.000000** HNRNPU ENSG00000153187 no Homo_sapiens CCCCCCC 7 Filter Binding Assay with purified protein. S 8174554 other SAP;SPRY 1071 1.000000** HNRNPU ENSG00000153187 no Homo_sapiens GGGGGGG 7 EMSA, UV crosslink, immunoprecipitation using HeLa cell nuclear extracts. UV crosslink, competition assay with purified protein. S 9765391 UV cross-linking;EMSA SAP;SPRY 1073 1.000000** HNRNPU ENSG00000153187 no Homo_sapiens GGGGGGG 7 Filter Binding Assay with purified protein. S 8174554 other SAP;SPRY 1072 1.000000** HNRNPU ENSG00000153187 no Homo_sapiens GGGGGGG 7 SDS-PAGE of ribonucleotide homopolymers with recombinant protein S 1628625 other SAP;SPRY 1068 1.000000** HNRNPU ENSG00000153187 no Homo_sapiens UUUUUUU 7 EMSA, UV crosslink, immunoprecipitation using HeLa cell nuclear extracts. UV crosslink, competition assay with purified protein. S 9765391 UV cross-linking;EMSA SAP;SPRY 1074 1.000000** HNRNPU ENSG00000153187 no Homo_sapiens UUUUUUU 7 SDS-PAGE of ribonucleotide homopolymers with recombinant protein S 1628625 other SAP;SPRY 1069 1.000000** HOW FBGN0264491 no Drosophila_melanogaster ACAUACUAACAC 12 protein affinity purification R 17507411 protein affinity purification KH 79 1.000000** HOW FBGN0264491 no Drosophila_melanogaster ACUAACA 7 RNAcompete C 23846655 RNAcompete KH M113_0.6 0.341651** HOW FBGN0264491 no Drosophila_melanogaster ACUAACC 7 RNAcompete C 23846655 RNAcompete KH M113_0.6 0.23324 HOW FBGN0264491 no Drosophila_melanogaster ACUAACG 7 RNAcompete C 23846655 RNAcompete KH M113_0.6 0.134429 HRB27C FBGN0004838 no Drosophila_melanogaster UAGGAUA 7 RNAcompete C 23846655 RNAcompete RRM M090_0.6 0.063461 HRB27C FBGN0004838 no Drosophila_melanogaster UAGGUUA 7 RNAcompete C 23846655 RNAcompete RRM M090_0.6 0.134074** HRB27C FBGN0004838 no Drosophila_melanogaster UAGGAAA 7 RNAcompete C 23846655 RNAcompete RRM M028_0.6 0.018343 HRB27C FBGN0004838 no Drosophila_melanogaster UAGGUAA 7 RNAcompete C 23846655 RNAcompete RRM M028_0.6 0.048747 HRB27C FBGN0004838 no Drosophila_melanogaster UAGGAUA 7 RNAcompete C 23846655 RNAcompete RRM M028_0.6 0.04911 HRB27C FBGN0004838 no Drosophila_melanogaster UAGGUUA 7 RNAcompete C 23846655 RNAcompete RRM M028_0.6 0.130510** HRB87F FBGN0004237 no Drosophila_melanogaster GGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M029_0.6 0.315660** HRB98DE FBGN0001215 no Drosophila_melanogaster GGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M092_0.6 0.329639** HRB98DE FBGN0001215 no Drosophila_melanogaster GGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M091_0.6 0.192877** HRB98DE FBGN0001215 no Drosophila_melanogaster GUUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M091_0.6 0.075156 HRB98DE FBGN0001215 no Drosophila_melanogaster GGUAGGU 7 RNAcompete C 23846655 RNAcompete RRM M091_0.6 0.04896 HRB98DE FBGN0001215 no Drosophila_melanogaster GUUAGGU 7 RNAcompete C 23846655 RNAcompete RRM M091_0.6 0.019078 HRB98DE FBGN0001215 no Drosophila_melanogaster AGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M093_0.6 0.095318 HRB98DE FBGN0001215 no Drosophila_melanogaster GGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M093_0.6 0.312457** HRP1 YOL123W no Saccharomyces_cerevisiae UAUAUAU 7 SOLUTION NMR PDB 16794580 SOLUTION NMR RRM 417 1.000000** HRP1 YOL123W no Saccharomyces_cerevisiae UACAUAA 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.038673 HRP1 YOL123W no Saccharomyces_cerevisiae UAUAUAA 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.101633 HRP1 YOL123W no Saccharomyces_cerevisiae UACGUAA 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.040546 HRP1 YOL123W no Saccharomyces_cerevisiae UAUGUAA 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.106555 HRP1 YOL123W no Saccharomyces_cerevisiae UACAUAC 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.022913 HRP1 YOL123W no Saccharomyces_cerevisiae UAUAUAC 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.060214 HRP1 YOL123W no Saccharomyces_cerevisiae UACGUAC 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.024022 HRP1 YOL123W no Saccharomyces_cerevisiae UAUGUAC 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.06313 HRP1 YOL123W no Saccharomyces_cerevisiae UACAUAG 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.057683 HRP1 YOL123W no Saccharomyces_cerevisiae UAUAUAG 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.15159 HRP1 YOL123W no Saccharomyces_cerevisiae UACGUAG 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.060476 HRP1 YOL123W no Saccharomyces_cerevisiae UAUGUAG 7 RNAcompete C 23846655 RNAcompete RRM M030_0.6 0.158931** IFIH1 ENSG00000115267 no Homo_sapiens GGCCCU 6 X-RAY DIFFRACTION PDB 23273991 X-RAY DIFFRACTION CARD;HELICASE_C;RESIII;RIG-I_C-RD 391 1.000000** IFIH1 ENSG00000115267 no Homo_sapiens GGGCCGCGGAU 11 X-RAY DIFFRACTION PDB 23273991 X-RAY DIFFRACTION CARD;HELICASE_C;RESIII;RIG-I_C-RD 546 1.000000** IFIH1 ENSG00000115267 no Homo_sapiens UCCG 4 X-RAY DIFFRACTION PDB 23273991 X-RAY DIFFRACTION CARD;HELICASE_C;RESIII;RIG-I_C-RD 400 1.000000** IGF2BP1 ENSG00000159217 no Homo_sapiens AAGCACCCGUU 11 SELEX C 12507992 SELEX KH;RRM M296_0.6 0.278085** IGF2BP2 ENSG00000073792 no Homo_sapiens AAAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.058613 IGF2BP2 ENSG00000073792 no Homo_sapiens CAAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.018336 IGF2BP2 ENSG00000073792 no Homo_sapiens GAAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.017855 IGF2BP2 ENSG00000073792 no Homo_sapiens ACAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.076341** IGF2BP2 ENSG00000073792 no Homo_sapiens CCAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.023882 IGF2BP2 ENSG00000073792 no Homo_sapiens GCAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.023256 IGF2BP2 ENSG00000073792 no Homo_sapiens AAAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.032073 IGF2BP2 ENSG00000073792 no Homo_sapiens CAAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.010034 IGF2BP2 ENSG00000073792 no Homo_sapiens GAAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.00977 IGF2BP2 ENSG00000073792 no Homo_sapiens ACAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.041773 IGF2BP2 ENSG00000073792 no Homo_sapiens CCAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.013068 IGF2BP2 ENSG00000073792 no Homo_sapiens GCAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.012726 IGF2BP2 ENSG00000073792 no Homo_sapiens AAACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.023029 IGF2BP2 ENSG00000073792 no Homo_sapiens CAACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.007204 IGF2BP2 ENSG00000073792 no Homo_sapiens GAACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.007015 IGF2BP2 ENSG00000073792 no Homo_sapiens ACACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.029994 IGF2BP2 ENSG00000073792 no Homo_sapiens CCACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.009383 IGF2BP2 ENSG00000073792 no Homo_sapiens GCACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.009137 IGF2BP2 ENSG00000073792 no Homo_sapiens AAAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.027242 IGF2BP2 ENSG00000073792 no Homo_sapiens CAAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.008522 IGF2BP2 ENSG00000073792 no Homo_sapiens GAAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.008299 IGF2BP2 ENSG00000073792 no Homo_sapiens ACAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.035481 IGF2BP2 ENSG00000073792 no Homo_sapiens CCAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.0111 IGF2BP2 ENSG00000073792 no Homo_sapiens GCAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.010809 IGF2BP2 ENSG00000073792 no Homo_sapiens AAAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.014907 IGF2BP2 ENSG00000073792 no Homo_sapiens CAAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.004663 IGF2BP2 ENSG00000073792 no Homo_sapiens GAAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.004541 IGF2BP2 ENSG00000073792 no Homo_sapiens ACAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.019415 IGF2BP2 ENSG00000073792 no Homo_sapiens CCAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.006074 IGF2BP2 ENSG00000073792 no Homo_sapiens GCAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.005915 IGF2BP2 ENSG00000073792 no Homo_sapiens AAACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.010703 IGF2BP2 ENSG00000073792 no Homo_sapiens CAACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.003348 IGF2BP2 ENSG00000073792 no Homo_sapiens GAACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.003261 IGF2BP2 ENSG00000073792 no Homo_sapiens ACACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.013941 IGF2BP2 ENSG00000073792 no Homo_sapiens CCACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.004361 IGF2BP2 ENSG00000073792 no Homo_sapiens GCACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M032_0.6 0.004247 IGF2BP3 ENSG00000136231 no Homo_sapiens AAAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.0329 IGF2BP3 ENSG00000136231 no Homo_sapiens ACAAACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.040492** IGF2BP3 ENSG00000136231 no Homo_sapiens AAAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.025377 IGF2BP3 ENSG00000136231 no Homo_sapiens ACAUACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.031233 IGF2BP3 ENSG00000136231 no Homo_sapiens AAACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.025302 IGF2BP3 ENSG00000136231 no Homo_sapiens ACACACA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.03114 IGF2BP3 ENSG00000136231 no Homo_sapiens AAAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.017073 IGF2BP3 ENSG00000136231 no Homo_sapiens ACAAUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.021012 IGF2BP3 ENSG00000136231 no Homo_sapiens AAAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.013169 IGF2BP3 ENSG00000136231 no Homo_sapiens ACAUUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.016208 IGF2BP3 ENSG00000136231 no Homo_sapiens AAACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.01313 IGF2BP3 ENSG00000136231 no Homo_sapiens ACACUCA 7 RNAcompete C 23846655 RNAcompete KH;RRM M163_0.6 0.016159 IGF2BP3 ENSG00000136231 no Homo_sapiens CAUU 4 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation KH;RRM 118 1.000000** IGHMBP2 ENSG00000132740 no Homo_sapiens AAAAAAA 7 X-RAY DIFFRACTION PDB 22965130 X-RAY DIFFRACTION R3H;ZF_AN1 581 1.000000** IGHMBP2 ENSG00000132740 no Homo_sapiens AAAAAAAA 8 X-RAY DIFFRACTION PDB 22965130 X-RAY DIFFRACTION R3H;ZF_AN1 327 1.000000** KHDRBS1 ENSG00000121774 no Homo_sapiens AUAAAA 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.043652 KHDRBS1 ENSG00000121774 no Homo_sapiens AUAAAAA 7 RNAcompete C 23846655 RNAcompete KH M160_0.6 0.159736 KHDRBS1 ENSG00000121774 no Homo_sapiens AUAAAAC 7 RNAcompete C 23846655 RNAcompete KH M160_0.6 0.109291 KHDRBS1 ENSG00000121774 no Homo_sapiens AUAAAAG 7 RNAcompete C 23846655 RNAcompete KH M160_0.6 0.230593** KHDRBS1 ENSG00000121774 no Homo_sapiens AUUUAA 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s33 0.21967 KHDRBS1 ENSG00000121774 no Homo_sapiens AUUUAC 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s33 0.437165** KHDRBS1 ENSG00000121774 no Homo_sapiens CAAAAU 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.052193 KHDRBS1 ENSG00000121774 no Homo_sapiens CUAAAA 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.130093** KHDRBS1 ENSG00000121774 no Homo_sapiens CUAAAU 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.130093** KHDRBS1 ENSG00000121774 no Homo_sapiens GAAAAC 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.005877 KHDRBS1 ENSG00000121774 no Homo_sapiens UUAAAA 6 Differential display and cDNA-representational difference analysis (cDNA-RDA) in vitro. In vivo coimmunoprecipitation. Further in vitro binding: protein incubated with labeled RNA. S 12490714 other KH 1156 1.000000** KHDRBS1 ENSG00000121774 no Homo_sapiens UUAAAA 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.086872 KHDRBS1 ENSG00000121774 no Homo_sapiens UUAAAU 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s34 0.086872 KHDRBS1 ENSG00000121774 no Homo_sapiens UUUUA 5 RNA pull-down assays with HEK293T nuclear extract, UV cross-linking and immunoprecipitation with HeLa and HEK293T nuclear extract, mutation analysis, EMSA and Western blot with HEK293T nuclear extract. S 20186123 EMSA;UV cross-linking KH 1157 1.000000** KHDRBS1 ENSG00000121774 no Homo_sapiens UUUUAC 6 SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein. S 9341174 SELEX KH s33 0.21967 KHDRBS1 ENSG00000121774 no Homo_sapiens UUUUUU 6 Differential display and cDNA-representational difference analysis (cDNA-RDA) in vitro. In vivo coimmunoprecipitation. Further in vitro binding: protein incubated with labeled RNA. S 12490714 other KH 1155 1.000000** KHDRBS1 ENSG00000121774 no Homo_sapiens UUUUUUU 7 Immunoblot analysis with 293 and 293T lysates. Northwestern with recombinant protein. S 17764653 other KH 1159 1.000000** KHDRBS1 ENSG00000121774 no Homo_sapiens UUUUUUU 7 Immunoprecipitation, immunoblotting with HeLa cell lysates. S 10913193 other KH 1158 1.000000** KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAAA 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.022476 KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAACA 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.023232 KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAGA 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.098258 KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAAC 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.024081 KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAACC 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.02489 KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAGC 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.105273 KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAAG 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.054883 KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAACG 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.056728 KHDRBS1 ENSMUSG00000028790 no Mus_musculus UAAAAGG 7 RNAcompete C 23846655 RNAcompete KH M060_0.6 0.239930** KHDRBS2 ENSG00000112232 no Homo_sapiens AAUAAAA 7 RNAcompete C 23846655 RNAcompete KH M176_0.6 0.096244 KHDRBS2 ENSG00000112232 no Homo_sapiens GAUAAAA 7 RNAcompete C 23846655 RNAcompete KH M176_0.6 0.128722** KHDRBS2 ENSG00000112232 no Homo_sapiens AAUAAAC 7 RNAcompete C 23846655 RNAcompete KH M176_0.6 0.059363 KHDRBS2 ENSG00000112232 no Homo_sapiens GAUAAAC 7 RNAcompete C 23846655 RNAcompete KH M176_0.6 0.079395 KHDRBS2 ENSG00000112232 no Homo_sapiens UUUUUUU 7 Immunoblot analysis with 293 and 293T lysates. Northwestern with recombinant protein. S 17764653 other KH 1242 1.000000** KHDRBS3 ENSG00000131773 no Homo_sapiens AAAUAAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete KH s103 0.047842** KHDRBS3 ENSG00000131773 no Homo_sapiens AGAUAAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete KH s103 0.02404 KHDRBS3 ENSG00000131773 no Homo_sapiens AUAAAAC 7 RNAcompete using recombinant protein S 19561594 RNAcompete KH s103 0.047842** KHDRBS3 ENSG00000131773 no Homo_sapiens AUAAAA 6 RNAcompete C 23846655 RNAcompete KH M033_0.6 0.211219 KHDRBS3 ENSG00000131773 no Homo_sapiens AUAAAC 6 RNAcompete C 23846655 RNAcompete KH M033_0.6 0.530114** KHDRBS3 ENSG00000131773 no Homo_sapiens AUAAAG 6 RNAcompete C 23846655 RNAcompete KH M033_0.6 0.224002 KHDRBS3 ENSG00000131773 no Homo_sapiens AUUAAAC 7 RNAcompete using recombinant protein S 19561594 RNAcompete KH s103 0.01205 KHDRBS3 ENSG00000131773 no Homo_sapiens UAAAUAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete KH s103 0.004545 KHDRBS3 ENSG00000131773 no Homo_sapiens UUUUUUU 7 Immunoblot analysis with 293 and 293T lysates. Northwestern with recombinant protein. S 17764653 other KH 1243 1.000000** KHSRP ENSG00000088247 no Homo_sapiens AGGG 4 NMR R 18684992 NMR KH 172 1.000000** KHSRP ENSG00000088247 no Homo_sapiens AUUUUA 6 UV cross-linking with recombinant protein S 16126846 UV cross-linking KH 1109 1.000000** KHSRP ENSG00000088247 no Homo_sapiens CACCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CUCCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CCCCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CGCCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CAGCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CUGCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CCGCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CGGCCUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CACCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CUCCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CCCCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CGCCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CAGCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CUGCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CCGCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CGGCUUCC 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 175 0.062344** KHSRP ENSG00000088247 no Homo_sapiens GGGU 4 NMR R 18684992 NMR KH 67 1.000000** KHSRP ENSG00000088247 no Homo_sapiens AUGUAUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens UUGUAUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CUGUAUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens GUGUAUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens AUGUGUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens UUGUGUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CUGUGUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens GUGUGUAU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens AUGUAUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens UUGUAUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CUGUAUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens GUGUAUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens AUGUGUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens UUGUGUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens CUGUGUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens GUGUGUGU 8 genome-wide in vivo immunoprecipitation R 17437629 genome-wide in vivo immunoprecipitation KH 41 0.062344** KHSRP ENSG00000088247 no Homo_sapiens UAGGG 5 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1117 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UAGGUA 6 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1120 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UAGGUU 6 NMR R 18684992 NMR KH 63 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UAGUAU 6 NMR R 18684992 NMR KH 54 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UAGUAU 6 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1119 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UAUUAU 6 NMR R 18684992 NMR KH 28 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UAUUAU 6 NMR and CD with recombinant protein S 17437720 NMR KH 1112 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UAUUAU 6 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1118 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UAUUUA 6 NMR and CD with recombinant protein S 17437720 NMR KH 1111 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UAUUUAUUAUUU 12 NMR and CD with recombinant protein S 17437720 NMR KH 1110 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UAUUUAUA 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 61 0.495098** KHSRP ENSG00000088247 no Homo_sapiens UAUUUAUU 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 61 0.495098** KHSRP ENSG00000088247 no Homo_sapiens UGCAUG 6 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA KH 1113 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UGGG 4 NMR R 18684992 NMR KH 13 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UGGGU 5 NMR R 18684992 NMR KH 184 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UGGGU 5 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1116 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UUAG 4 NMR R 18684992 NMR KH 12 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UUGGG 5 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1114 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UUUAG 5 NMR, scaffold-independent analysis (SIA) with recombinant protein S 18684992 SOLUTION NMR KH 1115 1.000000** KHSRP ENSG00000088247 no Homo_sapiens UAUAUUUA 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 81 0.247531** KHSRP ENSG00000088247 no Homo_sapiens UUUAUUUA 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 81 0.247531** KHSRP ENSG00000088247 no Homo_sapiens UAUAUUUU 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 81 0.247531** KHSRP ENSG00000088247 no Homo_sapiens UUUAUUUU 8 RIP-chip C 17437629 genome-wide in vivo immunoprecipitation KH 81 0.247531** KHSRP N/A no Gallus_gallus CCCC 4 SELEX R 17893325 SELEX N\A 1185_17893325.pfm 0.247531** KHSRP N/A no Gallus_gallus GUCC 4 SELEX R 17893325 SELEX N\A 1186_17893325.pfm 1.000000** KPOL_520P25 DS480421 no Vanderwaltozyma_polyspora UAAAAAAAA 9 X-RAY DIFFRACTION PDB 22722195 X-RAY DIFFRACTION PAZ;PIWI 447 1.000000** LARK FBGN0011640 no Drosophila_melanogaster ACAAA 5 RIP-chip C 17971870 RIP-chip ZF_CCHC;RRM 32 1.000000** LARK FBGN0011640 no Drosophila_melanogaster ACGCGCG 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M034_0.6 0.131602 LARK FBGN0011640 no Drosophila_melanogaster UCGCGCG 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M034_0.6 0.264735** LARK FBGN0011640 no Drosophila_melanogaster GCGCGCG 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M034_0.6 0.079312 LARK FBGN0011640 no Drosophila_melanogaster CGCGCG 6 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M119_0.6 0.321744** LARK FBGN0011640 no Drosophila_melanogaster GGCGCG 6 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M119_0.6 0.121695 LIN28A ENSG00000131914 no Homo_sapiens AGGAGAU 7 SOLUTION NMR PDB 22157959 SOLUTION NMR CSD;ZF_CCHC 506 1.000000** LIN28A ENSG00000131914 no Homo_sapiens AGGAGAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.104502 LIN28A ENSG00000131914 no Homo_sapiens UGGAGAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.068488 LIN28A ENSG00000131914 no Homo_sapiens CGGAGAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.133169** LIN28A ENSG00000131914 no Homo_sapiens AGGAGUA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.033962 LIN28A ENSG00000131914 no Homo_sapiens UGGAGUA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.022258 LIN28A ENSG00000131914 no Homo_sapiens CGGAGUA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M035_0.6 0.043278 LIN28A ENSG00000131914 no Homo_sapiens CGGAGGA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M153_0.6 0.097253** LIN28A ENSG00000131914 no Homo_sapiens UGGAGGA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M153_0.6 0.033765 LIN28A ENSG00000131914 no Homo_sapiens CGGAGGG 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M153_0.6 0.076571 LIN28A ENSG00000131914 no Homo_sapiens UGGAGGG 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;CSD M153_0.6 0.026585 LIN28A ENSMUSG00000050966 no Mus_musculus AGGGAUUUUG 10 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 513 1.000000** LIN28A ENSMUSG00000050966 no Mus_musculus AGUGAUUUU 9 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 395 1.000000** LIN28A ENSMUSG00000050966 no Mus_musculus CGGAG 5 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 369 1.000000** LIN28A ENSMUSG00000050966 no Mus_musculus CUAUGAUA 8 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 444 1.000000** LIN28A ENSMUSG00000050966 no Mus_musculus CUAUGAUACC 10 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 576 1.000000** LIN28A ENSMUSG00000050966 no Mus_musculus GGAG 4 X-RAY DIFFRACTION PDB 22078496 X-RAY DIFFRACTION CSD;ZF_CCHC 556 1.000000** LMJF.18.0180 LMJF.18.0180 no Leishmania_major CAUUUU 6 RNAcompete C 23846655 RNAcompete RRM M187_0.6 0.855774** LMJF.32.0750 LMJF.32.0750 no Leishmania_major GUACACG 7 RNAcompete C 23846655 RNAcompete RRM M194_0.6 0.151781 LMJF.32.0750 LMJF.32.0750 no Leishmania_major UUACACG 7 RNAcompete C 23846655 RNAcompete RRM M194_0.6 0.186238** LMJF.32.0750 LMJF.32.0750 no Leishmania_major GUUCACG 7 RNAcompete C 23846655 RNAcompete RRM M194_0.6 0.071844 LMJF.32.0750 LMJF.32.0750 no Leishmania_major UUUCACG 7 RNAcompete C 23846655 RNAcompete RRM M194_0.6 0.088154 LYZ ENSGALG00000009963 no Gallus_gallus CAGA 4 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION LYS 582 1.000000** MAL13P1.35 MAL13P1.35 no Plasmodium_falciparum AAUACAC 7 RNAcompete C 23846655 RNAcompete RRM M202_0.6 0.126547 MAL13P1.35 MAL13P1.35 no Plasmodium_falciparum GAUACAC 7 RNAcompete C 23846655 RNAcompete RRM M202_0.6 0.071918 MAL13P1.35 MAL13P1.35 no Plasmodium_falciparum AUUACAC 7 RNAcompete C 23846655 RNAcompete RRM M202_0.6 0.201392** MAL13P1.35 MAL13P1.35 no Plasmodium_falciparum GUUACAC 7 RNAcompete C 23846655 RNAcompete RRM M202_0.6 0.114452 MAL8P1.40 MAL8P1.40 no Plasmodium_falciparum AUACAUA 7 RNAcompete C 23846655 RNAcompete RRM M179_0.6 0.133392 MAL8P1.40 MAL8P1.40 no Plasmodium_falciparum UUACAUA 7 RNAcompete C 23846655 RNAcompete RRM M179_0.6 0.04739 MAL8P1.40 MAL8P1.40 no Plasmodium_falciparum AUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M179_0.6 0.335711** MAL8P1.40 MAL8P1.40 no Plasmodium_falciparum UUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M179_0.6 0.119269 MATR3 ENSG00000015479 no Homo_sapiens AAUCUUA 7 RNAcompete C 23846655 RNAcompete RRM M036_0.6 0.051845 MATR3 ENSG00000015479 no Homo_sapiens CAUCUUA 7 RNAcompete C 23846655 RNAcompete RRM M036_0.6 0.041532 MATR3 ENSG00000015479 no Homo_sapiens AAUCUUG 7 RNAcompete C 23846655 RNAcompete RRM M036_0.6 0.189347** MATR3 ENSG00000015479 no Homo_sapiens CAUCUUG 7 RNAcompete C 23846655 RNAcompete RRM M036_0.6 0.151681 MBL FBGN0265487 no Drosophila_melanogaster AGUCU 5 SELEX C 18557632 SELEX ZF_CCCH 174 1.000000** MBL FBGN0265487 no Drosophila_melanogaster AGUCU 5 SELEX R 18557632 SELEX ZF_CCCH 159 1.000000** MBL FBGN0265487 no Drosophila_melanogaster CUGCUGCUGCUG 12 EMSA R 18557632 EMSA ZF_CCCH 7 1.000000** MBNL1 ENSG00000152601 no Homo_sapiens ACGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.013753 MBNL1 ENSG00000152601 no Homo_sapiens ACGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.016806 MBNL1 ENSG00000152601 no Homo_sapiens ACGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01528 MBNL1 ENSG00000152601 no Homo_sapiens ACGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01528 MBNL1 ENSG00000152601 no Homo_sapiens AUGCCA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.008697 MBNL1 ENSG00000152601 no Homo_sapiens AUGCCC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.010628 MBNL1 ENSG00000152601 no Homo_sapiens AUGCCG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.009662 MBNL1 ENSG00000152601 no Homo_sapiens AUGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.028003 MBNL1 ENSG00000152601 no Homo_sapiens AUGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.025459 MBNL1 ENSG00000152601 no Homo_sapiens CCGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.018332 MBNL1 ENSG00000152601 no Homo_sapiens CCGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.022402 MBNL1 ENSG00000152601 no Homo_sapiens CCGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.020367 MBNL1 ENSG00000152601 no Homo_sapiens CCGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.020367 MBNL1 ENSG00000152601 no Homo_sapiens CGCUGCGGC 9 Mutational analysis, UV-crosslinking assay using purified recombinant protein. S 15257297 UV cross-linking ZF_CCCH 1124 1.000000** MBNL1 ENSG00000152601 no Homo_sapiens CGCUUU 6 Mutational analysis, UV-crosslinking assay using purified recombinant protein. S 15257297 UV cross-linking ZF_CCCH 1121 1.000000** MBNL1 ENSG00000152601 no Homo_sapiens CUGCCA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.011593 MBNL1 ENSG00000152601 no Homo_sapiens CUGCCC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.014166 MBNL1 ENSG00000152601 no Homo_sapiens CUGCCG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01288 MBNL1 ENSG00000152601 no Homo_sapiens CUGCCU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01288 MBNL1 ENSG00000152601 no Homo_sapiens CUGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.030546 MBNL1 ENSG00000152601 no Homo_sapiens CUGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.037326** MBNL1 ENSG00000152601 no Homo_sapiens CUGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.033936 MBNL1 ENSG00000152601 no Homo_sapiens CUGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.033936 MBNL1 ENSG00000152601 no Homo_sapiens GCGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.013075 MBNL1 ENSG00000152601 no Homo_sapiens GCGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.011888 MBNL1 ENSG00000152601 no Homo_sapiens GCGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.011888 MBNL1 ENSG00000152601 no Homo_sapiens GCGCUUGUGC 10 UV-crosslinking, mutational analysis, using HEK293T lysate overexpressing recombinant protein. S 17702765 UV cross-linking ZF_CCCH 1126 1.000000** MBNL1 ENSG00000152601 no Homo_sapiens GCUUGC 6 RNAcompete C 23846655 RNAcompete ZF_CCCH M037_0.6 0.458307** MBNL1 ENSG00000152601 no Homo_sapiens GGCUUU 6 RNA-affinity purification, western blot with HeLa nuclear extract S 20519504 other;RNA affinity chromatography/purification ZF_CCCH 1123 1.000000** MBNL1 ENSG00000152601 no Homo_sapiens GUGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.017829 MBNL1 ENSG00000152601 no Homo_sapiens GUGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.021787 MBNL1 ENSG00000152601 no Homo_sapiens GUGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.019808 MBNL1 ENSG00000152601 no Homo_sapiens GUGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.019808 MBNL1 ENSG00000152601 no Homo_sapiens UCGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.018332 MBNL1 ENSG00000152601 no Homo_sapiens UCGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.022402 MBNL1 ENSG00000152601 no Homo_sapiens UCGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.020367 MBNL1 ENSG00000152601 no Homo_sapiens UCGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.020367 MBNL1 ENSG00000152601 no Homo_sapiens UGCUGCUUUU 10 Mutational analysis, UV-crosslinking assay using purified recombinant protein. S 15257297 UV cross-linking ZF_CCCH 1122 1.000000** MBNL1 ENSG00000152601 no Homo_sapiens UGUCUCGCU 9 Mutational analysis, UV-crosslinking assay using purified recombinant protein. S 15257297 UV cross-linking ZF_CCCH 1125 1.000000** MBNL1 ENSG00000152601 no Homo_sapiens UUGCCA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.011593 MBNL1 ENSG00000152601 no Homo_sapiens UUGCCC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.014166 MBNL1 ENSG00000152601 no Homo_sapiens UUGCCG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01288 MBNL1 ENSG00000152601 no Homo_sapiens UUGCCU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.01288 MBNL1 ENSG00000152601 no Homo_sapiens UUGCUA 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.030546 MBNL1 ENSG00000152601 no Homo_sapiens UUGCUC 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.037326** MBNL1 ENSG00000152601 no Homo_sapiens UUGCUG 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.033936 MBNL1 ENSG00000152601 no Homo_sapiens UUGCUU 6 SELEX of 32nt random with recombinant protein. Consensus motifs: YGCY, YYYGCUKY. S 20071745 SELEX ZF_CCCH s30 0.033936 MBNL1 ENSG00000152601 no Homo_sapiens CGCC 4 SELEX C 20071745 SELEX ZF_CCCH M320_0.6a 0.082484 MBNL1 ENSG00000152601 no Homo_sapiens UGCC 4 SELEX C 20071745 SELEX ZF_CCCH M320_0.6a 0.109936 MBNL1 ENSG00000152601 no Homo_sapiens CGCU 4 SELEX C 20071745 SELEX ZF_CCCH M320_0.6a 0.329206 MBNL1 ENSG00000152601 no Homo_sapiens UGCU 4 SELEX C 20071745 SELEX ZF_CCCH M320_0.6a 0.438774** MBNL1 ENSG00000152601 no Homo_sapiens CCCGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UCCGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CUCGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UUCGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CCUGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UCUGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CUUGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UUUGCUGC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CCCGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UCCGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CUCGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UUCGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CCUGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UCUGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CUUGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UUUGCUUC 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CCCGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UCCGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CUCGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UUCGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CCUGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UCUGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CUUGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UUUGCUGU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CCCGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UCCGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CUCGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UUCGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CCUGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UCUGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens CUUGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MBNL1 ENSG00000152601 no Homo_sapiens UUUGCUUU 8 SELEX C 20071745 SELEX ZF_CCCH M320_0.6 0.031153** MEC-8 WBGENE00003172 no Caenorhabditis_elegans AAGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.129744 MEC-8 WBGENE00003172 no Caenorhabditis_elegans UAGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.102979 MEC-8 WBGENE00003172 no Caenorhabditis_elegans GAGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.070759 MEC-8 WBGENE00003172 no Caenorhabditis_elegans AUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.163262** MEC-8 WBGENE00003172 no Caenorhabditis_elegans UUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.129583 MEC-8 WBGENE00003172 no Caenorhabditis_elegans GUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M172_0.6 0.089038 MEX-3 WBGENE00003229 no Caenorhabditis_elegans AGAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans UGAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans GGAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans AUAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans UUAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans GUAGUAUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans AGAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans UGAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans GGAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans AUAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans UUAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans GUAGUUUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans AGAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans UGAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans GGAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans AUAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans UUAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-3 WBGENE00003229 no Caenorhabditis_elegans GUAGUCUA 8 SELEX R 19915141 SELEX KH 135 0.055432** MEX-5 WBGENE00003230 no Caenorhabditis_elegans UAAUAA 6 RNAcompete C 23846655 RNAcompete ZF_CCCH M038_0.6 0.484008** MEX-5 WBGENE00003230 no Caenorhabditis_elegans UAAUAU 6 RNAcompete C 23846655 RNAcompete ZF_CCCH M038_0.6 0.411972 MOD FBGN0002780 no Drosophila_melanogaster AAUGGAA 7 RNAcompete C 23846655 RNAcompete RRM M131_0.6 0.107211 MOD FBGN0002780 no Drosophila_melanogaster AUUGGAA 7 RNAcompete C 23846655 RNAcompete RRM M131_0.6 0.047652 MOD FBGN0002780 no Drosophila_melanogaster AGUGGAA 7 RNAcompete C 23846655 RNAcompete RRM M131_0.6 0.147703** MPT5 YGL178W no Saccharomyces_cerevisiae CAUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 94 0.332237** MPT5 YGL178W no Saccharomyces_cerevisiae CUUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 94 0.332237** MPT5 YGL178W no Saccharomyces_cerevisiae CCUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 94 0.332237** MPT5 YGL178W no Saccharomyces_cerevisiae UGUAACAAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 9 0.247531** MPT5 YGL178W no Saccharomyces_cerevisiae UGUAAUAAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 9 0.247531** MPT5 YGL178W no Saccharomyces_cerevisiae UGUAACAUUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 9 0.247531** MPT5 YGL178W no Saccharomyces_cerevisiae UGUAAUAUUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 9 0.247531** MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UAUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UUUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae UCUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 27 0.036996** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae AUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MPT5 YGL178W no Saccharomyces_cerevisiae UUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 177 0.031153** MSI FBGN0011666 no Drosophila_melanogaster AGUAGGA 7 RNAcompete C 23846655 RNAcompete RRM M096_0.6 0.082532 MSI FBGN0011666 no Drosophila_melanogaster AGUAGGU 7 RNAcompete C 23846655 RNAcompete RRM M096_0.6 0.080141 MSI FBGN0011666 no Drosophila_melanogaster AGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M096_0.6 0.241151** MSI FBGN0011666 no Drosophila_melanogaster AGUAGGA 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.075452 MSI FBGN0011666 no Drosophila_melanogaster AGUAGUA 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.072255 MSI FBGN0011666 no Drosophila_melanogaster AGUAGGU 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.143423** MSI FBGN0011666 no Drosophila_melanogaster AGUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.137346 MSI FBGN0011666 no Drosophila_melanogaster AGUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.049103 MSI FBGN0011666 no Drosophila_melanogaster AGUAGUG 7 RNAcompete C 23846655 RNAcompete RRM M095_0.6 0.047023 MSI1 ENSG00000135097 no Homo_sapiens UAGGAAG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.025563 MSI1 ENSG00000135097 no Homo_sapiens UAGUAAG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.074179 MSI1 ENSG00000135097 no Homo_sapiens UAGGUAG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.037227 MSI1 ENSG00000135097 no Homo_sapiens UAGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.108028** MSI1 ENSG00000135097 no Homo_sapiens UAGGAGG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.014558 MSI1 ENSG00000135097 no Homo_sapiens UAGUAGG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.042245 MSI1 ENSG00000135097 no Homo_sapiens UAGGUGG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.021201 MSI1 ENSG00000135097 no Homo_sapiens UAGUUGG 7 RNAcompete C 23846655 RNAcompete RRM M167_0.6 0.061522 MSI1 ENSG00000135097 no Homo_sapiens UAGUAAG 7 RNAcompete C 23846655 RNAcompete RRM M040_0.6 0.0992 MSI1 ENSG00000135097 no Homo_sapiens UAGUUAG 7 RNAcompete C 23846655 RNAcompete RRM M040_0.6 0.123187** MSI1 ENSG00000135097 no Homo_sapiens UAGUAGG 7 RNAcompete C 23846655 RNAcompete RRM M040_0.6 0.06609 MSI1 ENSG00000135097 no Homo_sapiens UAGUUGG 7 RNAcompete C 23846655 RNAcompete RRM M040_0.6 0.082071 MSI1 ENSMUSG00000054256 no Mus_musculus GUAGU 5 SOLUTION NMR PDB 22140116 SOLUTION NMR RRM 328 1.000000** MSL5 YLR116W no Saccharomyces_cerevisiae AUACUAAC 8 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION KH;ZF_CCHC 487 1.000000** MSL5 YLR116W no Saccharomyces_cerevisiae UACUAAC 7 UV cross-linking R 9182766 UV cross-linking KH;ZF_CCHC 168 1.000000** MSL5 YLR116W no Saccharomyces_cerevisiae UACUAAC 7 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION KH;ZF_CCHC 403 1.000000** MSL5 YLR116W no Saccharomyces_cerevisiae UACUAACA 8 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION KH;ZF_CCHC 387 1.000000** MSL5 YLR116W no Saccharomyces_cerevisiae UAUACUAACAA 11 EMSA R 9701290 EMSA KH;ZF_CCHC 132 1.000000** MSS116 YDR194C no Saccharomyces_cerevisiae AAAAAAA 7 X-RAY DIFFRACTION PDB 25497230 X-RAY DIFFRACTION DEAD;HELICASE_C 411 1.000000** MSS116 YDR194C no Saccharomyces_cerevisiae CCGCC 5 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 477 1.000000** MSS116 YDR194C no Saccharomyces_cerevisiae CGGGCC 6 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 529 1.000000** MSS116 YDR194C no Saccharomyces_cerevisiae GCCC 4 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 507 1.000000** MSS116 YDR194C no Saccharomyces_cerevisiae GCGGG 5 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 561 1.000000** MSS116 YDR194C no Saccharomyces_cerevisiae GCGGGC 6 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 430 1.000000** MSS116 YDR194C no Saccharomyces_cerevisiae GGCCC 5 X-RAY DIFFRACTION PDB 22940866 X-RAY DIFFRACTION DEAD;HELICASE_C 393 1.000000** MSS116 YDR194C no Saccharomyces_cerevisiae UUUUUU 6 X-RAY DIFFRACTION PDB 19748356 X-RAY DIFFRACTION DEAD;HELICASE_C 491 1.000000** MSS116 YDR194C no Saccharomyces_cerevisiae UUUUUUUU 8 X-RAY DIFFRACTION PDB 19748356 X-RAY DIFFRACTION DEAD;HELICASE_C 562 1.000000** MSS116 YDR194C no Saccharomyces_cerevisiae_s288c UUUUUU 6 X-RAY DIFFRACTION PDB 21945532 X-RAY DIFFRACTION DEAD;HELICASE_C 534 1.000000** MTR4 YJL050W no Saccharomyces_cerevisiae AAAAA 5 X-RAY DIFFRACTION PDB 20566885 X-RAY DIFFRACTION DEAD;DSHCT;HELICASE_C;RRNA_PROC_ARCH 470 1.000000** MXT FBGN0031637 no Drosophila_melanogaster CAACGAA 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.219515** MXT FBGN0031637 no Drosophila_melanogaster CGACGAA 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.132132 MXT FBGN0031637 no Drosophila_melanogaster CAACGAC 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.173478 MXT FBGN0031637 no Drosophila_melanogaster CGACGAC 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.104421 MXT FBGN0031637 no Drosophila_melanogaster CAACGAG 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.10622 MXT FBGN0031637 no Drosophila_melanogaster CGACGAG 7 RNAcompete C 23846655 RNAcompete KH M007_0.6 0.063937 NAB2 YGL122C no Saccharomyces_cerevisiae AAAAAG 6 genome-wide in vivo immunoprecipitation R 15703440 genome-wide in vivo immunoprecipitation NAB2 65 1.000000** NAB3 YPL190C no Saccharomyces_cerevisiae UCUU 4 SOLUTION NMR PDB 21084293 SOLUTION NMR RRM 404 1.000000** NAB3 YPL190C no Saccharomyces_cerevisiae UCUU 4 X-RAY DIFFRACTION PDB 20805243 X-RAY DIFFRACTION RRM 525 1.000000** NCL M15825 no Mesocricetus_auratus AAUCCCGAAG 10 SOLUTION NMR PDB 11118222 SOLUTION NMR RRM 543 1.000000** NCL M15825 no Mesocricetus_auratus UCCCGAG 7 SOLUTION NMR PDB 15033352 SOLUTION NMR RRM 496 1.000000** NCL N/A no Cricetulus_griseus AUUCGAACCGAG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGAUCCGAG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGACCCGAG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGAGCCGAG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGAACCGUG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGAUCCGUG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGACCCGUG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGAGCCGUG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGAACCGCG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGAUCCGCG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGACCCGCG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGAGCCGCG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGAACCGGG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGAUCCGGG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGACCCGGG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus AUUCGAGCCGGG 12 SELEX R 10858445 SELEX N\A 1026_10858445.pfm 1.000000** NCL N/A no Cricetulus_griseus UGCACAGAAGG 11 SELEX R 11376140 SELEX N\A 131_11376140.pfm 0.289475** NCU02404 NCU02404 no Neurospora_crassa GGAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.218509** NCU02404 NCU02404 no Neurospora_crassa GGUGGAA 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.094655 NCU02404 NCU02404 no Neurospora_crassa GGAGGAU 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.106096 NCU02404 NCU02404 no Neurospora_crassa GGUGGAU 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.045959 NCU02404 NCU02404 no Neurospora_crassa GGAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.155402 NCU02404 NCU02404 no Neurospora_crassa GGUGGAG 7 RNAcompete C 23846655 RNAcompete RRM M206_0.6 0.067318 NCU08034 NCU08034 no Neurospora_crassa AGCACA 6 RNAcompete C 23846655 RNAcompete RRM M186_0.6 0.533261** NCU08034 NCU08034 no Neurospora_crassa UGCACA 6 RNAcompete C 23846655 RNAcompete RRM M186_0.6 0.255027 NELFE ENSG00000204356 no Homo_sapiens CUCUGGUUAG 10 NMR R 18303858 NMR RRM 6 1.000000** NELFE ENSG00000204356 no Homo_sapiens GGUCUCUCUG 10 NMR R 18303858 NMR RRM 21 1.000000** NELFE ENSG00000204356 no Homo_sapiens UCUGGCUAAC 10 NMR R 18303858 NMR RRM 122 1.000000** NEMVEDRAFT_V1G104011 NEMVEDRAFT_V1G104011 no Nematostella_vectensis AGACACA 7 RNAcompete C 23846655 RNAcompete RRM M233_0.6 0.210350** NEMVEDRAFT_V1G104011 NEMVEDRAFT_V1G104011 no Nematostella_vectensis AGAUACA 7 RNAcompete C 23846655 RNAcompete RRM M233_0.6 0.12764 NEMVEDRAFT_V1G104011 NEMVEDRAFT_V1G104011 no Nematostella_vectensis AGACAGA 7 RNAcompete C 23846655 RNAcompete RRM M233_0.6 0.105847 NEMVEDRAFT_V1G104011 NEMVEDRAFT_V1G104011 no Nematostella_vectensis AGAUAGA 7 RNAcompete C 23846655 RNAcompete RRM M233_0.6 0.064228 NFKB1 ENSMUSG00000028163 no Mus_musculus AGGU 4 X-RAY DIFFRACTION PDB 12886018 X-RAY DIFFRACTION ANK;DEATH;RHD 453 1.000000** NFKB1 ENSMUSG00000028163 no Mus_musculus GAAA 4 X-RAY DIFFRACTION PDB 12886018 X-RAY DIFFRACTION ANK;DEATH;RHD 474 1.000000** NFKB1 ENSMUSG00000028163 no Mus_musculus GGCG 4 X-RAY DIFFRACTION PDB 12886018 X-RAY DIFFRACTION ANK;DEATH;RHD 549 1.000000** NONO ENSG00000147140 no Homo_sapiens AGGGA 5 SELEX C 9001221 SELEX RRM M307_0.6 0.876552** NONO ENSG00000147140 no Homo_sapiens GAGAGGAAC 9 SELEX C 12403470 SELEX RRM 185 1.000000** NOVA1 ENSG00000139910 no Homo_sapiens AACACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.111018 NOVA1 ENSG00000139910 no Homo_sapiens ACCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.111018 NOVA1 ENSG00000139910 no Homo_sapiens AGCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.111018 NOVA1 ENSG00000139910 no Homo_sapiens AUCAAC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.083332 NOVA1 ENSG00000139910 no Homo_sapiens AUCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.330854** NOVA1 ENSG00000139910 no Homo_sapiens AUCAUC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s27 0.083332 NOVA1 ENSG00000139910 no Homo_sapiens CAGUCAC 7 X-RAY DIFFRACTION PDB 21742260 X-RAY DIFFRACTION KH 440 1.000000** NOVA1 ENSG00000139910 no Homo_sapiens CCCCCCC 7 Immunoblots and Filter Binding Assay. S 8558240 other KH 1127 1.000000** NOVA1 ENSG00000139910 no Homo_sapiens GGGGGGG 7 Immunoblots and Filter Binding Assay. S 8558240 other KH 1128 1.000000** NOVA1 ENSG00000139910 no Homo_sapiens UCACC 5 X-RAY DIFFRACTION PDB 21742260 X-RAY DIFFRACTION KH 459 1.000000** NOVA1 ENSG00000139910 no Homo_sapiens UCAUUCAUUCAU 12 SELEX of 52nt random with recombinant protein. Consensus motif: UCAUYUCAUYUCAUY. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein. S 9154818 SELEX KH s94 1.000000** NOVA1 ENSG00000139910 no Homo_sapiens UCAC 4 SELEX C 10811881 SELEX KH 99 0.495098** NOVA1 ENSG00000139910 no Homo_sapiens UCAU 4 SELEX C 10811881 SELEX KH 99 0.495098** NOVA1 ENSG00000139910 no Homo_sapiens UGUGU 5 NMR titrations using recombinant protein S 17655233 SOLUTION NMR KH 1132 1.000000** NOVA1 ENSG00000139910 no Homo_sapiens UUCAG 5 NMR titrations using recombinant protein S 17655233 SOLUTION NMR KH 1131 1.000000** NOVA1 ENSG00000139910 no Homo_sapiens UUCAU 5 NMR titrations using recombinant protein S 17655233 SOLUTION NMR KH 1130 1.000000** NOVA1 ENSG00000139910 no Homo_sapiens UUUUUUU 7 Immunoblots and Filter Binding Assay. S 8558240 other KH 1129 1.000000** NOVA1 ENSG00000139910 no Homo_sapiens CCAC 4 NMR R 17655233 NMR KH 64 0.165840** NOVA1 ENSG00000139910 no Homo_sapiens UCAC 4 NMR R 17655233 NMR KH 64 0.165840** NOVA1 ENSG00000139910 no Homo_sapiens CCAU 4 NMR R 17655233 NMR KH 64 0.165840** NOVA1 ENSG00000139910 no Homo_sapiens UCAU 4 NMR R 17655233 NMR KH 64 0.165840** NOVA1 ENSG00000139910 no Homo_sapiens CCAG 4 NMR R 17655233 NMR KH 64 0.165840** NOVA1 ENSG00000139910 no Homo_sapiens UCAG 4 NMR R 17655233 NMR KH 64 0.165840** NOVA2 ENSG00000104967 no Homo_sapiens AACACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.111018 NOVA2 ENSG00000104967 no Homo_sapiens ACCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.111018 NOVA2 ENSG00000104967 no Homo_sapiens AGCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.111018 NOVA2 ENSG00000104967 no Homo_sapiens AUCAAC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.083332 NOVA2 ENSG00000104967 no Homo_sapiens AUCAC 5 X-ray crystallography with recombinant protein. S 10676814 X-RAY DIFFRACTION KH 1133 1.000000** NOVA2 ENSG00000104967 no Homo_sapiens AUCACC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.330854** NOVA2 ENSG00000104967 no Homo_sapiens AUCAUC 6 SELEX of 25nt random with recombinant protein. Consensus motif: UCAY. EMSA and Filter Binding Assay with recombinant protein. S 10811881 SELEX KH s28 0.083332 NOVA2 ENSG00000104967 no Homo_sapiens CCUAGAUCACC 11 X-RAY DIFFRACTION PDB 10676814 X-RAY DIFFRACTION KH 564 1.000000** NOVA2 ENSG00000104967 no Homo_sapiens GAGACAU 7 SELEX of 52-nt random with protein. Consensus motif: GAGUCAU. Filter Binding Assays, immunoblot of homopolymers. S 9789075 SELEX KH s29 0.332237** NOVA2 ENSG00000104967 no Homo_sapiens GAGGCAU 7 SELEX of 52-nt random with protein. Consensus motif: GAGUCAU. Filter Binding Assays, immunoblot of homopolymers. S 9789075 SELEX KH s29 0.332237** NOVA2 ENSG00000104967 no Homo_sapiens GAGUCAU 7 SELEX of 52-nt random with protein. Consensus motif: GAGUCAU. Filter Binding Assays, immunoblot of homopolymers. S 9789075 SELEX KH s29 0.332237** NOVA2 ENSG00000104967 no Homo_sapiens GAUCACC 7 X-RAY DIFFRACTION PDB 10676814 X-RAY DIFFRACTION KH 492 1.000000** NOVA2 ENSG00000104967 no Homo_sapiens GGGGGGG 7 SELEX of 52-nt random with protein. Consensus motif: GAGUCAU. Filter Binding Assays, immunoblot of homopolymers. S 9789075 SELEX KH s96 1.000000** NOVA2 ENSG00000104967 no Homo_sapiens UCAC 4 SELEX C 10811881 SELEX KH M325_0.6 1.000000** NOVA2 ENSG00000104967 no Homo_sapiens UCAU 4 SELEX C 10811881 SELEX KH M325_0.6 1.000000** NOVA2 ENSG00000104967 no Homo_sapiens UUUUUUU 7 SELEX of 52-nt random with protein. Consensus motif: GAGUCAU. Filter Binding Assays, immunoblot of homopolymers. S 9789075 SELEX KH s95 1.000000** NOVA2 ENSMUSG00000030411 no Mus_musculus CCAC 4 CLIP-seq C 18978773 genome-wide in vivo immunoprecipitation KH 179 0.247531** NOVA2 ENSMUSG00000030411 no Mus_musculus UCAC 4 CLIP-seq C 18978773 genome-wide in vivo immunoprecipitation KH 179 0.247531** NOVA2 ENSMUSG00000030411 no Mus_musculus CCAU 4 CLIP-seq C 18978773 genome-wide in vivo immunoprecipitation KH 179 0.247531** NOVA2 ENSMUSG00000030411 no Mus_musculus UCAU 4 CLIP-seq C 18978773 genome-wide in vivo immunoprecipitation KH 179 0.247531** NPL3 YDR432W no Saccharomyces_cerevisiae ACAUACA 7 RIP-chip C 15703440 genome-wide in vivo immunoprecipitation RRM 181 1.000000** NPL3 YDR432W no Saccharomyces_cerevisiae UAUAUAA 7 RIP-chip C 15703440 genome-wide in vivo immunoprecipitation RRM 148 1.000000** NUDT21 ENSG00000167005 no Homo_sapiens UGUA 4 X-RAY DIFFRACTION PDB 21295486 X-RAY DIFFRACTION NUDIX_2 499 1.000000** NUDT21 ENSG00000167005 no Homo_sapiens UUGUA 5 X-RAY DIFFRACTION PDB 20479262 X-RAY DIFFRACTION NUDIX_2 575 1.000000** NUDT21 ENSG00000167005 no Homo_sapiens UUGUA 5 X-RAY DIFFRACTION PDB 21295486 X-RAY DIFFRACTION NUDIX_2 420 1.000000** NXF1 ENSG00000162231 no Homo_sapiens AACCUG 6 X-RAY DIFFRACTION PDB 21822283 X-RAY DIFFRACTION LRR_1;NTF2;TAP-RNA_BIND;TAP_C 418 1.000000** NXF1 ENSG00000162231 no Homo_sapiens AGAC 4 X-RAY DIFFRACTION PDB 21822283 X-RAY DIFFRACTION LRR_1;NTF2;TAP-RNA_BIND;TAP_C 454 1.000000** NXF1 ENSG00000162231 no Homo_sapiens CCUG 4 X-RAY DIFFRACTION PDB 21822283 X-RAY DIFFRACTION LRR_1;NTF2;TAP-RNA_BIND;TAP_C 572 1.000000** OAS1 ENSG00000089127 no Homo_sapiens AAAGC 5 X-RAY DIFFRACTION PDB 23319625 X-RAY DIFFRACTION OAS1_C;NTP_TRANSF_2 485 1.000000** OAS1 ENSG00000089127 no Homo_sapiens GCAUAA 6 X-RAY DIFFRACTION PDB 23319625 X-RAY DIFFRACTION OAS1_C;NTP_TRANSF_2 535 1.000000** OAS1 ENSG00000089127 no Homo_sapiens UUGA 4 X-RAY DIFFRACTION PDB 23319625 X-RAY DIFFRACTION OAS1_C;NTP_TRANSF_2 385 1.000000** ORB2 FBGN0264307 no Drosophila_melanogaster GUUUGGG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.119009** ORB2 FBGN0264307 no Drosophila_melanogaster UUUUGGG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.117383 ORB2 FBGN0264307 no Drosophila_melanogaster GUUUUGG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.037622 ORB2 FBGN0264307 no Drosophila_melanogaster UUUUUGG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.037108 ORB2 FBGN0264307 no Drosophila_melanogaster GUUUGUG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.071075 ORB2 FBGN0264307 no Drosophila_melanogaster UUUUGUG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.070104 ORB2 FBGN0264307 no Drosophila_melanogaster GUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.022469 ORB2 FBGN0264307 no Drosophila_melanogaster UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.022162 ORB2 FBGN0264307 no Drosophila_melanogaster GUUUGGU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.03144 ORB2 FBGN0264307 no Drosophila_melanogaster UUUUGGU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.03101 ORB2 FBGN0264307 no Drosophila_melanogaster GUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.009939 ORB2 FBGN0264307 no Drosophila_melanogaster UUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.009803 ORB2 FBGN0264307 no Drosophila_melanogaster GUUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.018776 ORB2 FBGN0264307 no Drosophila_melanogaster UUUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.01852 ORB2 FBGN0264307 no Drosophila_melanogaster GUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.005936 ORB2 FBGN0264307 no Drosophila_melanogaster UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M120_0.6 0.005855 PABP FBGN0261619 no Drosophila_melanogaster GAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.053297 PABP FBGN0261619 no Drosophila_melanogaster GAAAAUA 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.075958 PABP FBGN0261619 no Drosophila_melanogaster GAAAACA 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.038905 PABP FBGN0261619 no Drosophila_melanogaster GAAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.097392 PABP FBGN0261619 no Drosophila_melanogaster GAAAAUC 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.138802** PABP FBGN0261619 no Drosophila_melanogaster GAAAACC 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.071094 PABP FBGN0261619 no Drosophila_melanogaster GAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.079382 PABP FBGN0261619 no Drosophila_melanogaster GAAAAUG 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.113134 PABP FBGN0261619 no Drosophila_melanogaster GAAAACG 7 RNAcompete C 23846655 RNAcompete RRM M130_0.6 0.057947 PABP2 LMJF.35.4130 no Leishmania_major AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M218_0.6 0.172821** PABP2 LMJF.35.4130 no Leishmania_major AAACAAA 7 RNAcompete C 23846655 RNAcompete RRM M218_0.6 0.166137 PABPC1 ENSG00000070756 no Homo_sapiens AAAAA 5 SELEX C 7908267 SELEX RRM M275_0.6 1.000000** PABPC1 ENSG00000070756 no Homo_sapiens AAAAAAA 7 X-RAY DIFFRACTION PDB 10499800 X-RAY DIFFRACTION RRM 452 1.000000** PABPC1 ENSG00000070756 no Homo_sapiens AAAAAAA 7 X-RAY DIFFRACTION PDB 23041282 X-RAY DIFFRACTION RRM 480 1.000000** PABPC1 ENSG00000070756 no Homo_sapiens AAAAAAAA 8 X-RAY DIFFRACTION PDB 10499800 X-RAY DIFFRACTION RRM 416 1.000000** PABPC1 ENSG00000070756 no Homo_sapiens ACAAACA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.023946 PABPC1 ENSG00000070756 no Homo_sapiens ACUAACA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.035081 PABPC1 ENSG00000070756 no Homo_sapiens ACGAACA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.023946 PABPC1 ENSG00000070756 no Homo_sapiens ACAAAUA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.047054 PABPC1 ENSG00000070756 no Homo_sapiens ACUAAUA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.068934** PABPC1 ENSG00000070756 no Homo_sapiens ACGAAUA 7 SELEX C 7908267 SELEX RRM M349_0.6 0.047054 PABPC1 ENSG00000070756 no Homo_sapiens ACAAACC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.023946 PABPC1 ENSG00000070756 no Homo_sapiens ACUAACC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.035081 PABPC1 ENSG00000070756 no Homo_sapiens ACGAACC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.023946 PABPC1 ENSG00000070756 no Homo_sapiens ACAAAUC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.047054 PABPC1 ENSG00000070756 no Homo_sapiens ACUAAUC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.068934** PABPC1 ENSG00000070756 no Homo_sapiens ACGAAUC 7 SELEX C 7908267 SELEX RRM M349_0.6 0.047054 PABPC1 ENSG00000070756 no Homo_sapiens AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M146_0.6 0.131246 PABPC1 ENSG00000070756 no Homo_sapiens AGAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M146_0.6 0.208479** PABPC1 ENSG00000070756 no Homo_sapiens AAAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M146_0.6 0.038875 PABPC1 ENSG00000070756 no Homo_sapiens AGAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M146_0.6 0.061751 PABPC3 ENSG00000151846 no Homo_sapiens AAAAACA 7 RNAcompete C 23846655 RNAcompete RRM M144_0.6 0.069717 PABPC3 ENSG00000151846 no Homo_sapiens GAAAACA 7 RNAcompete C 23846655 RNAcompete RRM M144_0.6 0.150436 PABPC3 ENSG00000151846 no Homo_sapiens AAAAACC 7 RNAcompete C 23846655 RNAcompete RRM M144_0.6 0.116268 PABPC3 ENSG00000151846 no Homo_sapiens GAAAACC 7 RNAcompete C 23846655 RNAcompete RRM M144_0.6 0.250885** PABPC4 ENSG00000090621 no Homo_sapiens AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M042_0.6 0.287831** PABPC4 ENSG00000090621 no Homo_sapiens AAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M042_0.6 0.086233 PABPC5 ENSG00000174740 no Homo_sapiens AGAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M162_0.6 0.176616** PABPC5 ENSG00000174740 no Homo_sapiens AGAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M162_0.6 0.08682 PABPC5 ENSG00000174740 no Homo_sapiens AGAAAGU 7 RNAcompete C 23846655 RNAcompete RRM M162_0.6 0.07471 PABPN1 ENSG00000100836 no Homo_sapiens AAAAGA 6 RNAcompete C 23846655 RNAcompete RRM M148_0.6 0.198788 PABPN1 ENSG00000100836 no Homo_sapiens AGAAGA 6 RNAcompete C 23846655 RNAcompete RRM M148_0.6 0.491566** PAP1 YKR002W no Saccharomyces_cerevisiae AAAA 4 X-RAY DIFFRACTION PDB 17850751 X-RAY DIFFRACTION PAP_RNA_BIND 349 1.000000** PAPI FBGN0031401 no Drosophila_melanogaster GGUGUGU 7 RNAcompete C 23846655 RNAcompete KH M011_0.6 0.063669 PAPI FBGN0031401 no Drosophila_melanogaster UGUGUGU 7 RNAcompete C 23846655 RNAcompete KH M011_0.6 0.258946** PAPI FBGN0031401 no Drosophila_melanogaster GGUUUGU 7 RNAcompete C 23846655 RNAcompete KH M011_0.6 0.021683 PAPI FBGN0031401 no Drosophila_melanogaster UGUUUGU 7 RNAcompete C 23846655 RNAcompete KH M011_0.6 0.088184 PCBP1 ENSG00000169564 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 771 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens AAACCAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 756 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens AAAUUACC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 758 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens AAAUUCAC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 759 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens AAAUUCCA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 757 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens AAAUUCCC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 750 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens ACAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 752 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens ACCUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 755 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CAAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 753 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CCAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 754 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CCCCACCCUCUU 12 EMSA R 11827469 EMSA KH 93 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CCCCCCC 7 EMSA, UV cross-linking, competition assays, western blot, pull-down assay and mass spectrometry with AGS cytoplasmic extracts. S 17928403 UV cross-linking;EMSA KH 776 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 769 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CCCCCCC 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH KH 774 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CCCCCCC 7 UV cross-linking. Cell-free translation of different mRNAs. S 9160751 UV cross-linking KH 773 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CCCCCCC 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 763 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CCCUCCC 7 Mutational analysis, UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 UV cross-linking KH 748 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CCCUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 751 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CCCUUCCC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 749 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens CCAAACC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.029729 PCBP1 ENSG00000169564 no Homo_sapiens CCUAACC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.059686 PCBP1 ENSG00000169564 no Homo_sapiens CCAUACC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.04748 PCBP1 ENSG00000169564 no Homo_sapiens CCUUACC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.095327 PCBP1 ENSG00000169564 no Homo_sapiens CCAAUCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.031596 PCBP1 ENSG00000169564 no Homo_sapiens CCUAUCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.063435 PCBP1 ENSG00000169564 no Homo_sapiens CCAUUCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.050463 PCBP1 ENSG00000169564 no Homo_sapiens CCUUUCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.101314** PCBP1 ENSG00000169564 no Homo_sapiens CCAACCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.0148 PCBP1 ENSG00000169564 no Homo_sapiens CCUACCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.029714 PCBP1 ENSG00000169564 no Homo_sapiens CCAUCCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.023637 PCBP1 ENSG00000169564 no Homo_sapiens CCUUCCC 7 RNAcompete C 23846655 RNAcompete KH M177_0.6 0.047457 PCBP1 ENSG00000169564 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 770 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other KH 762 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens GGGGGGG 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 764 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens UCCCCAA 7 UV cross-linking, Chemical shift mapping (NMR) with recombinant protein. S 16854432 UV cross-linking;SOLUTION NMR KH 760 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens UUAGAG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 766 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens UUAGGA 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 767 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens UUAGGG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 768 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens UUUUUUU 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 772 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens UUUUUUU 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH KH 775 1.000000** PCBP1 ENSG00000169564 no Homo_sapiens UUUUUUU 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 765 1.000000** PCBP1 ENSMUSG00000051695 no Mus_musculus CCUUCC 6 RNAcompete C 23846655 RNAcompete KH M207_0.6 0.065373 PCBP1 ENSMUSG00000051695 no Mus_musculus CUUUCC 6 RNAcompete C 23846655 RNAcompete KH M207_0.6 0.226796** PCBP2 ENSDARG00000013184 no Danio_rerio AAUCCC 6 RNAcompete C 23846655 RNAcompete KH M211_0.6 0.037973 PCBP2 ENSDARG00000013184 no Danio_rerio UAUCCC 6 RNAcompete C 23846655 RNAcompete KH M211_0.6 0.111538 PCBP2 ENSDARG00000013184 no Danio_rerio AUUCCC 6 RNAcompete C 23846655 RNAcompete KH M211_0.6 0.054143 PCBP2 ENSDARG00000013184 no Danio_rerio UUUCCC 6 RNAcompete C 23846655 RNAcompete KH M211_0.6 0.159036** PCBP2 ENSG00000197111 no Homo_sapiens AAACCAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 786 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens AAAUUACC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 788 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens AAAUUCAC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 789 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens AAAUUCCA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 787 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens AAAUUCCC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 780 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens ACAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 782 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens ACCUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 785 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CAAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 783 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CCAUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 784 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CCAUUC 6 Protein affinity purification with HeLa nuclear extract, mass spectrometry, western blot. S 17451601 other KH 777 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 795 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCC 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH KH 797 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCC 7 Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers. S 7607214 other KH 791 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CCCU 4 X-RAY DIFFRACTION PDB 17526645 X-RAY DIFFRACTION KH 334 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CCCUAA 6 X-RAY DIFFRACTION PDB 17526645 X-RAY DIFFRACTION KH 370 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CCCUCCC 7 Mutational analysis, UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 UV cross-linking KH 778 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CCCUUAAA 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 781 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CCCUUCCC 8 Pull-down assay with recombinant protein and HeLa cell extracts. S 17609276 other KH 779 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCA 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.006211 PCBP2 ENSG00000197111 no Homo_sapiens CCUCCCA 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.012776 PCBP2 ENSG00000197111 no Homo_sapiens CCCUCCA 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.01115 PCBP2 ENSG00000197111 no Homo_sapiens CCUUCCA 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.022935 PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCU 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.005838 PCBP2 ENSG00000197111 no Homo_sapiens CCUCCCU 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.012009 PCBP2 ENSG00000197111 no Homo_sapiens CCCUCCU 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.010481 PCBP2 ENSG00000197111 no Homo_sapiens CCUUCCU 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.021558 PCBP2 ENSG00000197111 no Homo_sapiens CCCCCCC 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.024594 PCBP2 ENSG00000197111 no Homo_sapiens CCUCCCC 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.050587 PCBP2 ENSG00000197111 no Homo_sapiens CCCUCCC 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.044151 PCBP2 ENSG00000197111 no Homo_sapiens CCUUCCC 7 RNAcompete C 23846655 RNAcompete KH M043_0.6 0.090813** PCBP2 ENSG00000197111 no Homo_sapiens CUAACCCUAA 10 NMR R 15331611 NMR KH 156 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens CUAACCCUAA 10 NMR using recombinant protein S 15331611 SOLUTION NMR KH 800 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein. S 8917439 other KH 796 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens GGGGGGG 7 Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract. S 3386636 other KH 790 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens UCCCCA 6 NMR R 15331611 NMR KH 166 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens UCCCCA 6 NMR using recombinant protein S 15331611 SOLUTION NMR KH 799 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens UUAGAG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 792 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens UUAGGA 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 793 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens UUAGGG 6 EMSA with Hela nuclear extract and Synthesized oligos. EMSA with purified proteins and Synthesized oligos. S 8321232 EMSA KH 794 1.000000** PCBP2 ENSG00000197111 no Homo_sapiens UUUUUUU 7 UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts S 12011088 KH KH 798 1.000000** PCBP3 ENSMUSG00000001120 no Mus_musculus UUUCCC 6 RNAcompete C 23846655 RNAcompete KH M188_0.6 0.243852** PCBP3 ENSMUSG00000001120 no Mus_musculus UUUUCC 6 RNAcompete C 23846655 RNAcompete KH M188_0.6 0.105947 PF10_0068 PF10_0068 no Plasmodium_falciparum GGAGGA 6 RNAcompete C 23846655 RNAcompete RRM M180_0.6 0.429046** PF10_0068 PF10_0068 no Plasmodium_falciparum GGUGGA 6 RNAcompete C 23846655 RNAcompete RRM M180_0.6 0.210428 PF10_0214 PF10_0214 no Plasmodium_falciparum AUACCGA 7 RNAcompete C 23846655 RNAcompete RRM M208_0.6 0.131787 PF10_0214 PF10_0214 no Plasmodium_falciparum UUACCGA 7 RNAcompete C 23846655 RNAcompete RRM M208_0.6 0.078749 PF10_0214 PF10_0214 no Plasmodium_falciparum AUUCCGA 7 RNAcompete C 23846655 RNAcompete RRM M208_0.6 0.215099** PF10_0214 PF10_0214 no Plasmodium_falciparum UUUCCGA 7 RNAcompete C 23846655 RNAcompete RRM M208_0.6 0.128533 PF13_0315 PF13_0315 no Plasmodium_falciparum GUACAUA 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.043411 PF13_0315 PF13_0315 no Plasmodium_falciparum UUACAUA 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.134941 PF13_0315 PF13_0315 no Plasmodium_falciparum GUGCAUA 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.019358 PF13_0315 PF13_0315 no Plasmodium_falciparum UUGCAUA 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.060171 PF13_0315 PF13_0315 no Plasmodium_falciparum GUACAUU 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.029844 PF13_0315 PF13_0315 no Plasmodium_falciparum UUACAUU 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.092767 PF13_0315 PF13_0315 no Plasmodium_falciparum GUGCAUU 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.013308 PF13_0315 PF13_0315 no Plasmodium_falciparum UUGCAUU 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.041366 PF13_0315 PF13_0315 no Plasmodium_falciparum GUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.062547 PF13_0315 PF13_0315 no Plasmodium_falciparum UUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.194422** PF13_0315 PF13_0315 no Plasmodium_falciparum GUGCAUG 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.02789 PF13_0315 PF13_0315 no Plasmodium_falciparum UUGCAUG 7 RNAcompete C 23846655 RNAcompete RRM M181_0.6 0.086694 PFF0320C PFF0320C no Plasmodium_falciparum ACUAAAC 7 RNAcompete C 23846655 RNAcompete RRM M203_0.6 0.152437** PFF0320C PFF0320C no Plasmodium_falciparum ACUAAUC 7 RNAcompete C 23846655 RNAcompete RRM M203_0.6 0.097556 PFI1435W PFI1435W no Plasmodium_falciparum UGUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M182_0.6 0.076642 PFI1435W PFI1435W no Plasmodium_falciparum UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M182_0.6 0.188183** PFI1435W PFI1435W no Plasmodium_falciparum UGUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M182_0.6 0.043791 PFI1435W PFI1435W no Plasmodium_falciparum UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M182_0.6 0.107524 PFI1695C PFI1695C no Plasmodium_falciparum CCAGCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.119252** PFI1695C PFI1695C no Plasmodium_falciparum CUAGCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.091787 PFI1695C PFI1695C no Plasmodium_falciparum CCUGCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.118612 PFI1695C PFI1695C no Plasmodium_falciparum CUUGCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.091294 PFI1695C PFI1695C no Plasmodium_falciparum CCAUCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.039806 PFI1695C PFI1695C no Plasmodium_falciparum CUAUCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.030639 PFI1695C PFI1695C no Plasmodium_falciparum CCUUCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.039593 PFI1695C PFI1695C no Plasmodium_falciparum CUUUCAC 7 RNAcompete C 23846655 RNAcompete RRM M183_0.6 0.030474 PHAX ENSG00000164902 no Homo_sapiens AUCG 4 SOLUTION NMR PDB 20430857 SOLUTION NMR RNA_GG_BIND 472 1.000000** PIWIL1 ENSG00000125207 no Homo_sapiens GCUU 4 X-RAY DIFFRACTION PDB 21193640 X-RAY DIFFRACTION GAGE;PAZ;PIWI 508 1.000000** PIWIL1 ENSMUSG00000029423 no Mus_musculus CCGACU 6 SOLUTION NMR PDB 21237665 SOLUTION NMR PAZ;PIWI 415 1.000000** POS-1 WBGENE00004078 no Caenorhabditis_elegans UUAUUAUUUGUU 12 EMSA R 18952820 EMSA ZF_CCCH 134 1.000000** PPIE ENSG00000084072 no Homo_sapiens AAAAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 45 1.000000** PPIE ENSG00000084072 no Homo_sapiens AAUAAA 6 NMR R 20460131 NMR RRM;PRO_ISOMERASE 36 1.000000** PPIE ENSG00000084072 no Homo_sapiens AAUAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 20 1.000000** PPIE ENSG00000084072 no Homo_sapiens UUUUUU 6 single RNA affinity purification R 18258190 single RNA affinity purification RRM;PRO_ISOMERASE 89 1.000000** PPIE ENSG00000084072 no Homo_sapiens AAAAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAAAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUAAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUAAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAUAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAUAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUUAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUUAAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAAUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAAUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUAUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUAUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAUUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAUUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUUUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUUUAA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAAAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAAAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUAAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUAAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAUAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAUAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUUAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUUAUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAAUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAAUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUAUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUAUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAUUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAUUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUUUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUUUUA 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAAAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAAAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUAAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUAAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAUAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAUAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUUAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUUAAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAAUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAAUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUAUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUAUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAUUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAUUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUUUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUUUAU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAAAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAAAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUAAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUAAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAUAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAUAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUUAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUUAUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAAUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAAUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUAUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUAUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AAUUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UAUUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens AUUUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPIE ENSG00000084072 no Homo_sapiens UUUUUU 6 single RNA affinity purification R 18258190 other RRM;PRO_ISOMERASE 75 0.015596** PPR10 GRMZM2G177169 no Zea_mays AUUUC 5 X-RAY DIFFRACTION PDB 24162847 X-RAY DIFFRACTION PPR 505 1.000000** PPR10 GRMZM2G177169 no Zea_mays GUAUU 5 X-RAY DIFFRACTION PDB 24162847 X-RAY DIFFRACTION PPR 331 1.000000** PPR10 GRMZM2G177169 no Zea_mays GUAUU 5 X-RAY DIFFRACTION PDB 25231995 X-RAY DIFFRACTION PPR 449 1.000000** PPR10 GRMZM2G177169 no Zea_mays UAUUUC 6 X-RAY DIFFRACTION PDB 24162847 X-RAY DIFFRACTION PPR 500 1.000000** PPR10 GRMZM2G177169 no Zea_mays UAUUUC 6 X-RAY DIFFRACTION PDB 25231995 X-RAY DIFFRACTION PPR 373 1.000000** PPRC1 ENSG00000148840 no Homo_sapiens CCGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.036737 PPRC1 ENSG00000148840 no Homo_sapiens GCGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.047364 PPRC1 ENSG00000148840 no Homo_sapiens CGGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.019061 PPRC1 ENSG00000148840 no Homo_sapiens GGGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.024574 PPRC1 ENSG00000148840 no Homo_sapiens CCGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.057248 PPRC1 ENSG00000148840 no Homo_sapiens GCGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.073808** PPRC1 ENSG00000148840 no Homo_sapiens CGGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.029703 PPRC1 ENSG00000148840 no Homo_sapiens GGGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M044_0.6 0.038295 PRKRA-B XB-GENE-940708 no Xenopus_laevis CGCG 4 X-RAY DIFFRACTION PDB 9857205 X-RAY DIFFRACTION DSRM 483 1.000000** PRKRA-B XB-GENE-940708 no Xenopus_laevis GCGC 4 X-RAY DIFFRACTION PDB 9857205 X-RAY DIFFRACTION DSRM 382 1.000000** PRNP ENSBTAG00000027937 no Bos_taurus GAGGA 5 SOLUTION NMR PDB 23180780 SOLUTION NMR PRION 421 1.000000** PRP24 YMR268C no Saccharomyces_cerevisiae AAACA 5 X-RAY DIFFRACTION PDB 24837192 X-RAY DIFFRACTION LSM_INTERACT;RRM 552 1.000000** PRP24 YMR268C no Saccharomyces_cerevisiae AGAGAU 6 SOLUTION NMR PDB 20181740 SOLUTION NMR LSM_INTERACT;RRM 338 1.000000** PRP24 YMR268C no Saccharomyces_cerevisiae UACAGAG 7 X-RAY DIFFRACTION PDB 24837192 X-RAY DIFFRACTION LSM_INTERACT;RRM 383 1.000000** PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000019 PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000102 PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000051 PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000033 PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000016 PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000089 PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUACAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000045 PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000019 PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000009 PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000051 PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000026 PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000016 PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000008 PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000045 PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUGCAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000022 PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000027 PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000013 PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000073 PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000023 PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000012 PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000064 PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUAUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000032 PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000013 PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000007 PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000018 PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000012 PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000006 PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000032 PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUGUAC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000016 PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000074 PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000204** PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000102 PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000065 PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000033 PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000179 PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUACGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000089 PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000019 PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000102 PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000051 PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000033 PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000016 PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000089 PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUGCGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000045 PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000053 PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000027 PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000146 PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000073 PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000046 PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000023 PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000128 PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUAUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000064 PSI FBGN0014870 no Drosophila_melanogaster ACCCCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000027 PSI FBGN0014870 no Drosophila_melanogaster GCCCCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000013 PSI FBGN0014870 no Drosophila_melanogaster ACUCCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000073 PSI FBGN0014870 no Drosophila_melanogaster GCUCCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000037 PSI FBGN0014870 no Drosophila_melanogaster ACCUCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000023 PSI FBGN0014870 no Drosophila_melanogaster GCCUCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000012 PSI FBGN0014870 no Drosophila_melanogaster ACUUCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000064 PSI FBGN0014870 no Drosophila_melanogaster GCUUCUUGUGC 11 SELEX C 11565747 SELEX KH M343_0.6 0.000032 PTBP1 ENSG00000011304 no Homo_sapiens AUCUUC 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.04703 PTBP1 ENSG00000011304 no Homo_sapiens CCCCCCC 7 Fluorescence spectroscopy with recombinant protein. S 9305981 other PTBP1 1016 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CCUCUUU 7 Mutagenesis, in vivo splicing assay S 21518792 other PTBP1 1003 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CCUUCCUU 8 Mutational analysis. S 16260624 other PTBP1 1002 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CCUUUCCC 8 EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 EMSA;UV cross-linking PTBP1 996 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUCCAUCUU 9 EMSA with recombinant protein. RNA footprinting. S 16431980 EMSA PTBP1 994 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUCU 4 SOLUTION NMR PDB 16179478 SOLUTION NMR RRM 489 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUCUC 5 in vitro RNA pulldown R 19861426 other RRM 8 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 Immunodepletion, UV crosslink in WERI-1 and HeLa extracts, immunoprecipitation, immunoblot. S 10911989 UV cross-linking PTBP1 1006 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 NMR R 11788707 NMR RRM 133 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 NMR, EMSA with recombinant protein S 16179478 SOLUTION NMR PTBP1 1025 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA PTBP1 1008 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 SOLUTION NMR PDB 16179478 SOLUTION NMR RRM 380 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUCUCU 6 UV crosslink in HeLa and WERI-1 nuclear extracts, competition assay, immunoprecipitation. EMSA supershift in HeLa nuclear extracts. S 9234723 UV cross-linking PTBP1 1004 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUCUUA 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.124689 PTBP1 ENSG00000011304 no Homo_sapiens CUCUUC 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.186723** PTBP1 ENSG00000011304 no Homo_sapiens CUCUUG 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.124689 PTBP1 ENSG00000011304 no Homo_sapiens CUCUUU 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.062655 PTBP1 ENSG00000011304 no Homo_sapiens CUCUUU 6 UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 UV cross-linking;other PTBP1 1000 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUAA 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUUA 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUCA 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUGA 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUAU 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUUU 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUCU 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUGU 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUAC 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUUC 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUCC 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUGC 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUAG 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUUG 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUCG 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUGG 4 NMR R 16179478 NMR RRM 165 0.062500** PTBP1 ENSG00000011304 no Homo_sapiens CUUC 4 NMR R 11788707 NMR RRM 11 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUUCUCUCU 9 Chemical shift mapping (NMR) using recombinant protein S 15341728 SOLUTION NMR PTBP1 1024 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUUCUCUCU 9 NMR R 15341728 NMR RRM 25 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUUCUCUCU 9 UV-crosslink, EMSA S 15840818 UV cross-linking;EMSA PTBP1 1009 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CUUUCUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete PTBP1 s100 0.004545 PTBP1 ENSG00000011304 no Homo_sapiens GGGGGGG 7 Fluorescence spectroscopy with recombinant protein. S 9305981 other PTBP1 1017 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens GUCUUA 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.031405 PTBP1 ENSG00000011304 no Homo_sapiens GUCUUU 6 Mutagenesis, Pull down assay and Western blot with HeLa nucelar extract. S 19016857 other PTBP1 999 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens GUCUUU 6 UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 UV cross-linking;other PTBP1 1001 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens ACUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.022113 PTBP1 ENSG00000011304 no Homo_sapiens UCUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.014343 PTBP1 ENSG00000011304 no Homo_sapiens CCUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.049196 PTBP1 ENSG00000011304 no Homo_sapiens AUUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.07111 PTBP1 ENSG00000011304 no Homo_sapiens UUUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.046122 PTBP1 ENSG00000011304 no Homo_sapiens CUUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.158201** PTBP1 ENSG00000011304 no Homo_sapiens ACUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.009613 PTBP1 ENSG00000011304 no Homo_sapiens UCUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.006235 PTBP1 ENSG00000011304 no Homo_sapiens CCUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.021386 PTBP1 ENSG00000011304 no Homo_sapiens AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.030913 PTBP1 ENSG00000011304 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.02005 PTBP1 ENSG00000011304 no Homo_sapiens CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M227_0.6 0.068773 PTBP1 ENSG00000011304 no Homo_sapiens UAGCUGUG 8 EMSA with recombinant protein. RNA footprinting. S 16431980 EMSA PTBP1 993 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCCUCUUC 8 Chemical shift mapping (NMR) S 11788707 SOLUTION NMR PTBP1 1022 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCCUCUUC 8 NMR R 11788707 NMR RRM 105 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUAUCU 7 RNAcompete using recombinant protein S 19561594 RNAcompete PTBP1 s100 0.016053 PTBP1 ENSG00000011304 no Homo_sapiens UCUCU 5 Chemical shift mapping (NMR) S 11788707 SOLUTION NMR PTBP1 1021 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUCU 5 NMR R 11788707 NMR RRM 117 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUCU 5 SOLUTION NMR PDB 16179478 SOLUTION NMR RRM 539 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUCUC 6 UV crosslink, western blot, immunoprecipitation in HeLa nuclear extracts. S 11931771 UV cross-linking PTBP1 992 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUU 4 NMR R 11788707 NMR RRM 51 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUU 4 SELEX C 9214659 SELEX RRM 31 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUUC 5 Chemical shift mapping (NMR) S 11788707 SOLUTION NMR PTBP1 1019 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUUC 5 NMR R 11788707 NMR RRM 136 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUCU 8 Chemical shift mapping (NMR) S 11788707 SOLUTION NMR PTBP1 1023 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUCU 8 NMR R 11788707 NMR RRM 71 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUCUCUU 11 UV cross-link with recombinant protein and with HeLa nuclear extract containing increasing protein concentrations. Mutation analysis. S 12649496 UV cross-linking PTBP1 1011 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUCUUC 10 NMR R 11788707 NMR RRM 100 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUU 7 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s80 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUUCUU 7 in vitro splicing in HeLa nuclear extract. S 9436911 other PTBP1 1014 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUUU 5 Chemical shift mapping (NMR) S 11788707 SOLUTION NMR PTBP1 1020 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUUU 5 NMR R 11788707 NMR RRM 59 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UCUUUCU 7 RNAcompete using recombinant protein S 19561594 RNAcompete PTBP1 s100 0.031948 PTBP1 ENSG00000011304 no Homo_sapiens UUACUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete PTBP1 s100 0.018045 PTBP1 ENSG00000011304 no Homo_sapiens UUAUUUUUCCCC 12 EMSA, UV crosslink, immunoprecipitation with recombinant protein. S 9858533 EMSA;UV cross-linking PTBP1 995 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UUCUCUUUUCU 11 EMSA with recombinant protein. S 20080103 EMSA PTBP1 1013 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UUCUCUUUUCU 11 EMSA with recombinant protein. RNA footprinting. S 16431980 EMSA PTBP1 1012 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UUCUUC 6 Mutagenesis, Pull down assay and Western blot with HeLa nucelar extract. S 19016857 other PTBP1 998 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UUCUUC 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.093595 PTBP1 ENSG00000011304 no Homo_sapiens UUCUUG 6 SELEX of 20nt random with recombinant protein. Consensus motifs: UCUU and UCUUC. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors. S 9214659 SELEX PTBP1 s12 0.0625 PTBP1 ENSG00000011304 no Homo_sapiens UUCUUU 6 Mutagenesis, Pull down assay and Western blot with HeLa nucelar extract. S 19016857 other PTBP1 997 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UUUCUUU 7 RNAcompete using recombinant protein S 19561594 RNAcompete PTBP1 s100 0.071644** PTBP1 ENSG00000011304 no Homo_sapiens UUUCUUU 7 UV crosslink, western blot, immunoprecipitation in HeLa nuclear extracts. S 11931771 UV cross-linking PTBP1 991 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UUUUUUU 7 Fluorescence spectroscopy with recombinant protein. S 9305981 other PTBP1 1018 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UUUUUUU 7 RNA affinity chromatography confirmed by UV crosslink and Western blot using HeLa nuclear extracts. S 8449401 RNA affinity chromatography/purification;UV cross-linking PTBP1 1015 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens CCUAA 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUAA 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUUA 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUUA 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUCA 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUCA 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUGA 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUGA 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUAU 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUAU 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUUU 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUUU 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUCU 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUCU 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUGU 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUGU 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUAC 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUAC 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUUC 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUUC 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUCC 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUCC 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUGC 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUGC 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUAG 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUAG 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUUG 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUUG 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUCG 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUCG 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens CCUGG 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP1 ENSG00000011304 no Homo_sapiens UCUGG 5 NMR R 16179478 NMR RRM 143 0.031230** PTBP2 ENSG00000117569 no Homo_sapiens CUCUCU 6 RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot. S 11003644 UV cross-linking;RNA affinity chromatography/purification;EMSA RRM 1134 1.000000** PUF-7 WBGENE00004243 no Caenorhabditis_elegans UGUAUC 6 X-RAY DIFFRACTION PDB PubMed ID is not available X-RAY DIFFRACTION PUF 394 1.000000** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAAAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUAAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACAAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGAAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAUAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUUAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACUAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGUAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAACAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUCAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACCAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGCAUAA 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAAAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUAAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACAAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGAAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAUAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUUAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACUAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGUAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAACAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUCAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACCAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGCAUAU 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAAAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUAAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACAAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGAAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAAUAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUUAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACUAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGUAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAACAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAUCAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUACCAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF-8 WBGENE00004244 no Caenorhabditis_elegans UGUAGCAUAG 10 yeast three-hybrid screen R 16244662 yeast three-hybrid screen PUF 23 0.027762** PUF2 YPR042C no Saccharomyces_cerevisiae CAUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 62 0.332237** PUF2 YPR042C no Saccharomyces_cerevisiae CUUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 62 0.332237** PUF2 YPR042C no Saccharomyces_cerevisiae CCUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 62 0.332237** PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UAUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UUUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae UCUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 53 0.036996** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae AUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF2 YPR042C no Saccharomyces_cerevisiae UUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF;RRM 24 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae CAUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 0 0.332237** PUF3 YLL013C no Saccharomyces_cerevisiae CUUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 0 0.332237** PUF3 YLL013C no Saccharomyces_cerevisiae CCUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 0 0.332237** PUF3 YLL013C no Saccharomyces_cerevisiae CAUGUAAAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** PUF3 YLL013C no Saccharomyces_cerevisiae CUUGUAAAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** PUF3 YLL013C no Saccharomyces_cerevisiae CCUGUAAAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** PUF3 YLL013C no Saccharomyces_cerevisiae CAUGUAUAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** PUF3 YLL013C no Saccharomyces_cerevisiae CUUGUAUAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** PUF3 YLL013C no Saccharomyces_cerevisiae CCUGUAUAUA 10 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 173 0.165840** PUF3 YLL013C no Saccharomyces_cerevisiae UGUAAAUA 8 X-RAY DIFFRACTION PDB 19918084 X-RAY DIFFRACTION PUF 497 1.000000** PUF3 YLL013C no Saccharomyces_cerevisiae UGUAUAUA 8 X-RAY DIFFRACTION PDB 19918084 X-RAY DIFFRACTION PUF 360 1.000000** PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UAUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UUUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae UCUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 127 0.036996** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae AUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF3 YLL013C no Saccharomyces_cerevisiae UUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 29 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae CAUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 10 0.332237** PUF4 YGL014W no Saccharomyces_cerevisiae CUUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 10 0.332237** PUF4 YGL014W no Saccharomyces_cerevisiae CCUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 10 0.332237** PUF4 YGL014W no Saccharomyces_cerevisiae UGUAU 5 X-RAY DIFFRACTION PDB 22467831 X-RAY DIFFRACTION PUF 460 1.000000** PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAAUA 9 EMSA R 18327269 EMSA PUF 55 1.000000** PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUACUA 9 EMSA R 18327269 EMSA PUF 16 1.000000** PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAGUA 9 EMSA R 18327269 EMSA PUF 103 1.000000** PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAUA 8 EMSA R 18327269 EMSA PUF 98 1.000000** PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAUA 8 X-RAY DIFFRACTION PDB 18327269 X-RAY DIFFRACTION PUF 550 1.000000** PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAUUA 9 EMSA R 18327269 EMSA PUF 101 1.000000** PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAUUA 9 X-RAY DIFFRACTION PDB 18327269 X-RAY DIFFRACTION PUF 490 1.000000** PUF4 YGL014W no Saccharomyces_cerevisiae UGUAUAUUUA 10 EMSA R 18327269 EMSA PUF 22 1.000000** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 73 0.036996** PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAAAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAUAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUACAAUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAAAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUAUAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AAUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UAUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AUUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UUUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae ACUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae UCUGUACAUUA 11 RIP-chip C 15024427 genome-wide in vivo immunoprecipitation PUF 149 0.027732** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae AUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF4 YGL014W no Saccharomyces_cerevisiae UUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 157 0.031153** PUF68 FBGN0028577 no Drosophila_melanogaster UAAAAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.002074 PUF68 FBGN0028577 no Drosophila_melanogaster UAUAAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.007167 PUF68 FBGN0028577 no Drosophila_melanogaster UAAUAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.002011 PUF68 FBGN0028577 no Drosophila_melanogaster UAUUAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.006949 PUF68 FBGN0028577 no Drosophila_melanogaster UAAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.006063 PUF68 FBGN0028577 no Drosophila_melanogaster UAUGAGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.020951 PUF68 FBGN0028577 no Drosophila_melanogaster UAAAGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.001038 PUF68 FBGN0028577 no Drosophila_melanogaster UAUAGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.003588 PUF68 FBGN0028577 no Drosophila_melanogaster UAAUGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.001007 PUF68 FBGN0028577 no Drosophila_melanogaster UAUUGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.003479 PUF68 FBGN0028577 no Drosophila_melanogaster UAAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.003036 PUF68 FBGN0028577 no Drosophila_melanogaster UAUGGGA 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.01049 PUF68 FBGN0028577 no Drosophila_melanogaster UAAAAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.007214 PUF68 FBGN0028577 no Drosophila_melanogaster UAUAAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.024931 PUF68 FBGN0028577 no Drosophila_melanogaster UAAUAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.006995 PUF68 FBGN0028577 no Drosophila_melanogaster UAUUAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.024174 PUF68 FBGN0028577 no Drosophila_melanogaster UAAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.021091 PUF68 FBGN0028577 no Drosophila_melanogaster UAUGAGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.072883** PUF68 FBGN0028577 no Drosophila_melanogaster UAAAGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.003612 PUF68 FBGN0028577 no Drosophila_melanogaster UAUAGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.012483 PUF68 FBGN0028577 no Drosophila_melanogaster UAAUGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.003503 PUF68 FBGN0028577 no Drosophila_melanogaster UAUUGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.012104 PUF68 FBGN0028577 no Drosophila_melanogaster UAAGGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.01056 PUF68 FBGN0028577 no Drosophila_melanogaster UAUGGGG 7 RNAcompete C 23846655 RNAcompete RRM M132_0.6 0.036492 PUM FBGN0003165 no Drosophila_melanogaster AAUUGUACAUAA 12 fluorescence methods R 19540345 other PUF 154 1.000000** PUM FBGN0003165 no Drosophila_melanogaster CUUGUAGAUAA 11 fluorescence methods R 19540345 other PUF 48 1.000000** PUM FBGN0003165 no Drosophila_melanogaster UGUAAAG 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.075198 PUM FBGN0003165 no Drosophila_melanogaster UGUAUAG 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.076259 PUM FBGN0003165 no Drosophila_melanogaster UGUACAG 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.231810** PUM FBGN0003165 no Drosophila_melanogaster UGUAAAU 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.074485 PUM FBGN0003165 no Drosophila_melanogaster UGUAUAU 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.075536 PUM FBGN0003165 no Drosophila_melanogaster UGUACAU 7 RNAcompete C 23846655 RNAcompete PUF M045_0.6 0.229612 PUM FBGN0003165 no Drosophila_melanogaster UGUAAAG 7 RNAcompete C 23846655 RNAcompete PUF M097_0.6 0.108367 PUM FBGN0003165 no Drosophila_melanogaster UGUACAG 7 RNAcompete C 23846655 RNAcompete PUF M097_0.6 0.259987** PUM FBGN0003165 no Drosophila_melanogaster UGUAAAU 7 RNAcompete C 23846655 RNAcompete PUF M097_0.6 0.083386 PUM FBGN0003165 no Drosophila_melanogaster UGUACAU 7 RNAcompete C 23846655 RNAcompete PUF M097_0.6 0.200054 PUM FBGN0003165 no Drosophila_melanogaster UGUAAAG 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.110536 PUM FBGN0003165 no Drosophila_melanogaster UGUACAG 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.081881 PUM FBGN0003165 no Drosophila_melanogaster UGUAAGG 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.039232 PUM FBGN0003165 no Drosophila_melanogaster UGUACGG 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.029062 PUM FBGN0003165 no Drosophila_melanogaster UGUAAAU 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.136543** PUM FBGN0003165 no Drosophila_melanogaster UGUACAU 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.101146 PUM FBGN0003165 no Drosophila_melanogaster UGUAAGU 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.048463 PUM FBGN0003165 no Drosophila_melanogaster UGUACGU 7 RNAcompete C 23846655 RNAcompete PUF M099_0.6 0.035899 PUM FBGN0003165 no Drosophila_melanogaster UGUAAAU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.072635 PUM FBGN0003165 no Drosophila_melanogaster UGUAUAU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.030804 PUM FBGN0003165 no Drosophila_melanogaster UGUAAUU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.166220** PUM FBGN0003165 no Drosophila_melanogaster UGUAUUU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.070492 PUM FBGN0003165 no Drosophila_melanogaster UGUAAGU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.04961 PUM FBGN0003165 no Drosophila_melanogaster UGUAUGU 7 RNAcompete C 23846655 RNAcompete PUF M101_0.6 0.021039 PUM FBGN0003165 no Drosophila_melanogaster UGUACAG 7 RNAcompete C 23846655 RNAcompete PUF M098_0.6 0.247005** PUM FBGN0003165 no Drosophila_melanogaster UGUAUAG 7 RNAcompete C 23846655 RNAcompete PUF M098_0.6 0.123721 PUM FBGN0003165 no Drosophila_melanogaster UGUACAU 7 RNAcompete C 23846655 RNAcompete PUF M098_0.6 0.211164 PUM FBGN0003165 no Drosophila_melanogaster UGUAUAU 7 RNAcompete C 23846655 RNAcompete PUF M098_0.6 0.105768 PUM FBGN0003165 no Drosophila_melanogaster UGUGUAUAUA 10 EMSA R 19146813 EMSA PUF 5 1.000000** PUM1 ENSG00000134644 no Homo_sapiens AAUUGUACAUAA 12 fluorescence methods R 19540345 other PUF 137 1.000000** PUM1 ENSG00000134644 no Homo_sapiens CCAGAAUUGUA 11 EMSA R 9404893 EMSA PUF 82 1.000000** PUM1 ENSG00000134644 no Homo_sapiens CUUGUAGAUAA 11 fluorescence methods R 19540345 other PUF 74 1.000000** PUM1 ENSG00000134644 no Homo_sapiens UGUAAAUA 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 533 1.000000** PUM1 ENSG00000134644 no Homo_sapiens UGUAAUAUU 9 X-RAY DIFFRACTION PDB 18328718 X-RAY DIFFRACTION PUF 484 1.000000** PUM1 ENSG00000134644 no Homo_sapiens UGUACAU 7 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 569 1.000000** PUM1 ENSG00000134644 no Homo_sapiens UGUACAUA 8 X-RAY DIFFRACTION PDB 12202039 X-RAY DIFFRACTION PUF 389 1.000000** PUM1 ENSG00000134644 no Homo_sapiens UGUACAUC 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 406 1.000000** PUM1 ENSG00000134644 no Homo_sapiens UGUAGAUA 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 337 1.000000** PUM1 ENSG00000134644 no Homo_sapiens UGUAAAUA 8 RIP-chip C 18411299 genome-wide in vivo immunoprecipitation PUF 151 0.332237** PUM1 ENSG00000134644 no Homo_sapiens UGUAUAUA 8 RIP-chip C 18411299 genome-wide in vivo immunoprecipitation PUF 151 0.332237** PUM1 ENSG00000134644 no Homo_sapiens UGUACAUA 8 RIP-chip C 18411299 genome-wide in vivo immunoprecipitation PUF 151 0.332237** PUM1 ENSG00000134644 no Homo_sapiens UGUAAAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 114 0.332237** PUM1 ENSG00000134644 no Homo_sapiens UGUAUAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 114 0.332237** PUM1 ENSG00000134644 no Homo_sapiens UGUACAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 114 0.332237** PUM1 ENSG00000134644 no Homo_sapiens UGUAUAU 7 X-RAY DIFFRACTION PDB 12202039 X-RAY DIFFRACTION PUF 419 1.000000** PUM1 ENSG00000134644 no Homo_sapiens UGUAUAUA 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 339 1.000000** PUM1 ENSG00000134644 no Homo_sapiens UGUCCAG 7 X-RAY DIFFRACTION PDB 12202039 X-RAY DIFFRACTION PUF 545 1.000000** PUM1 ENSG00000134644 no Homo_sapiens UUUAAUGUU 9 X-RAY DIFFRACTION PDB 18328718 X-RAY DIFFRACTION PUF 343 1.000000** PUM2 ENSG00000055917 no Homo_sapiens UGUAAAUA 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 503 1.000000** PUM2 ENSG00000055917 no Homo_sapiens UGUACAUC 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 361 1.000000** PUM2 ENSG00000055917 no Homo_sapiens UGUAGAUA 8 X-RAY DIFFRACTION PDB 21397187 X-RAY DIFFRACTION PUF 514 1.000000** PUM2 ENSG00000055917 no Homo_sapiens UGUAAAUA 8 RIP-chip C 18776931 genome-wide in vivo immunoprecipitation PUF 116 0.332237** PUM2 ENSG00000055917 no Homo_sapiens UGUAUAUA 8 RIP-chip C 18776931 genome-wide in vivo immunoprecipitation PUF 116 0.332237** PUM2 ENSG00000055917 no Homo_sapiens UGUACAUA 8 RIP-chip C 18776931 genome-wide in vivo immunoprecipitation PUF 116 0.332237** PUM2 ENSG00000055917 no Homo_sapiens UGUAAAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 129 0.332237** PUM2 ENSG00000055917 no Homo_sapiens UGUAUAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 129 0.332237** PUM2 ENSG00000055917 no Homo_sapiens UGUACAUA 8 genome-wide in vivo immunoprecipitation R 18776931 genome-wide in vivo immunoprecipitation PUF 129 0.332237** PUM2 ENSG00000055917 no Homo_sapiens UGUAAAUA 8 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation PUF 107 0.250000** PUM2 ENSG00000055917 no Homo_sapiens UGUAUAUA 8 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation PUF 107 0.250000** PUM2 ENSG00000055917 no Homo_sapiens UGUACAUA 8 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation PUF 107 0.250000** PUM2 ENSG00000055917 no Homo_sapiens UGUAGAUA 8 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation PUF 107 0.250000** PUM2 ENSMUSG00000020594 no Mus_musculus AAUUGUACAUAA 12 fluorescence methods R 19540345 other PUF 115 1.000000** PUM2 ENSMUSG00000020594 no Mus_musculus CUUGUAGAUAA 11 fluorescence methods R 19540345 other PUF 66 1.000000** PUM2 ENSMUSG00000020594 no Mus_musculus UGUA 4 SELEX C 11780640 SELEX PUF M286_0.6 1.000000** PUM2 ENSMUSG00000020594 no Mus_musculus UGUA 4 SELEX R 11780640 SELEX PUF 329_11780640.pfm 1.000000** PUM2 ENSXETG00000008903 no Xenopus_tropicalis CAUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 180 0.332237** PUM2 ENSXETG00000008903 no Xenopus_tropicalis CUUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 180 0.332237** PUM2 ENSXETG00000008903 no Xenopus_tropicalis CCUGUAAAUA 10 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 180 0.332237** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAAAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAAAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAAACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUAUACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UAUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UCUGUACACUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 18 0.036996** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAACAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUCAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAAUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUUAAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAACUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUCUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAAUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUUUAUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAACAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUCAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAAUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUUAUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAACUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUCUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAAUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis AUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** PUM2 ENSXETG00000008903 no Xenopus_tropicalis UUGUAUUUUUA 11 genome-wide in vivo immunoprecipitation R 15024427 genome-wide in vivo immunoprecipitation PUF 87 0.031153** QKI ENSG00000112531 no Homo_sapiens ACACACUAACCU 12 fluorescence methods R 15273320 other KH 104 1.000000** QKI ENSG00000112531 no Homo_sapiens ACUAAC 6 PAR-clip C 20371350 genome-wide in vivo immunoprecipitation KH 3 1.000000** QKI ENSG00000112531 no Homo_sapiens ACUAAC 6 X-RAY DIFFRACTION PDB 23630077 X-RAY DIFFRACTION KH 352 1.000000** QKI ENSG00000112531 no Homo_sapiens ACUAACA 7 RNAcompete C 23846655 RNAcompete KH M046_0.6 0.278208** QKI ENSG00000112531 no Homo_sapiens ACUAACC 7 RNAcompete C 23846655 RNAcompete KH M046_0.6 0.206363 QKI ENSG00000112531 no Homo_sapiens ACUAACG 7 RNAcompete C 23846655 RNAcompete KH M046_0.6 0.117093 QKI ENSG00000112531 no Homo_sapiens ACUUAU 6 EMSA with WT and mutated sequences with recombinant protein S 24722255 EMSA KH 1141 1.000000** QKI ENSG00000112531 no Homo_sapiens AUCUAAUCAUAU 12 fluorescence methods R 15273320 other KH 83 1.000000** QKI ENSG00000112531 no Homo_sapiens AUCUACUCAUAU 12 fluorescence methods R 15273320 other KH 70 1.000000** QKI ENSG00000112531 no Homo_sapiens AUUAAC 6 EMSA with WT and mutated sequences and UV crosslinking with recombinant protein S 24722255 UV cross-linking;EMSA KH 1138 1.000000** QKI ENSG00000112531 no Homo_sapiens CUAAU 5 EMSA with WT and mutated sequences and UV crosslinking with recombinant protein S 24722255 UV cross-linking;EMSA KH 1139 1.000000** QKI ENSG00000112531 yes Homo_sapiens ACUAAU 6 EMSA with WT and mutated sequences with recombinant protein S 24722255 EMSA KH 1142 1.000000** QKI ENSG00000112531 yes Homo_sapiens CGAGU 5 EMSA with WT and mutated sequences and UV crosslinking with recombinant protein S 24722255 UV cross-linking;EMSA KH 1140 1.000000** QKR58E-1 FBGN0022986 no Drosophila_melanogaster AUAAUAA 7 RNAcompete C 23846655 RNAcompete KH M133_0.6 0.207101** QKR58E-1 FBGN0022986 no Drosophila_melanogaster AUAAUUA 7 RNAcompete C 23846655 RNAcompete KH M133_0.6 0.079727 QKR58E-1 FBGN0022986 no Drosophila_melanogaster AUAAUAC 7 RNAcompete C 23846655 RNAcompete KH M133_0.6 0.054792 QKR58E-1 FBGN0022986 no Drosophila_melanogaster AUAAUUC 7 RNAcompete C 23846655 RNAcompete KH M133_0.6 0.021093 RALY ENSG00000125970 no Homo_sapiens UUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M150_0.6 0.114798 RALY ENSG00000125970 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M150_0.6 0.129166 RALY ENSG00000125970 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M150_0.6 0.363845** RAVER1 ENSMUSG00000010205 no Mus_musculus UCAUGCAGUCUG 12 Isothermal titration calorimetry R 19523901 other RRM 152 1.000000** RB97D FBGN0004903 no Drosophila_melanogaster GGAGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.000213 RB97D FBGN0004903 no Drosophila_melanogaster UGAGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.000495 RB97D FBGN0004903 no Drosophila_melanogaster GUAGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.000008 RB97D FBGN0004903 no Drosophila_melanogaster UUAGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.000018 RB97D FBGN0004903 no Drosophila_melanogaster GGGGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.01953 RB97D FBGN0004903 no Drosophila_melanogaster UGGGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.045381** RB97D FBGN0004903 no Drosophila_melanogaster GUGGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.000724 RB97D FBGN0004903 no Drosophila_melanogaster UUGGG 5 RNAcompete C 23846655 RNAcompete RRM M230_0.6 0.001681 RBFOX1 ENSDARG00000014746 no Danio_rerio GCAUG 5 SELEX C 12574126 SELEX RRM M297_0.6 0.855000** RBFOX1 ENSG00000078328 no Homo_sapiens AGCAUG 6 Mutational analysis. In vivo splicing with wt and mutated sequences. S 22434879 other RRM 621 1.000000** RBFOX1 ENSG00000078328 no Homo_sapiens AGCAUG 6 SELEX of 40nt random with recombinant protein. Consensus motif: UGCAUG. Immunoblot, siRNA, pulldown assay. S 16537540 SELEX RRM s92 0.495098** RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 Immunoblot, siRNA, pulldown assay. S 16537540 other RRM 617 1.000000** RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 Mutational analysis. In vivo splicing with wt and mutated sequences. S 22434879 other RRM 620 1.000000** RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 SELEX C 16537540 SELEX RRM M298_0.6 0.937447** RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 SELEX of 40nt random with recombinant protein. Consensus motif: UGCAUG. Immunoblot, siRNA, pulldown assay. S 16537540 SELEX RRM s92 0.495098** RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 UV cross-linking with HeLa nuclear extract and immunoprecipitation S 18573872 UV cross-linking RRM 616 1.000000** RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUG 6 siRNA-mediated knockdown, UV cross-linking with HeLa nuclear extract and immunoprecipitation. S 17101796 UV cross-linking;other RRM 613 1.000000** RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUGU 7 SOLUTION NMR PDB 16362037 SOLUTION NMR RRM 335 1.000000** RBFOX1 ENSG00000078328 no Homo_sapiens AGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M159_0.6 0.097901 RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M159_0.6 0.183322 RBFOX1 ENSG00000078328 no Homo_sapiens AGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M159_0.6 0.150257 RBFOX1 ENSG00000078328 no Homo_sapiens UGCAUGC 7 RNAcompete C 23846655 RNAcompete RRM M159_0.6 0.281360** RBFOX1 ENSG00000078328 yes Homo_sapiens UGACUG 6 siRNA-mediated knockdown, UV cross-linking with HeLa nuclear extract and immunoprecipitation. S 17101796 UV cross-linking;other RRM 612 1.000000** RBFOX2 ENSG00000100320 no Homo_sapiens UGCAUG 6 Immunoblot, siRNA, pulldown assay. S 16537540 other RRM 627 1.000000** RBFOX2 ENSG00000100320 no Homo_sapiens UGCAUG 6 In vivo splicing in HEK293T with wt and mutated sequences S 22044765 other RRM 630 1.000000** RBFOX2 ENSG00000100320 no Homo_sapiens UGCAUG 6 Splicing assays with wt and mutant minigenes, immunoblotting S 19564422 other RRM 631 1.000000** RBFOX2 ENSG00000100320 no Homo_sapiens UGCAUG 6 UV cross-linking with HeLa nuclear extract and immunoprecipitation S 18573872 UV cross-linking RRM 625 1.000000** RBFOX2 ENSG00000100320 no Homo_sapiens UGCAUG 6 protein affinity purification R 16537540 protein affinity purification RRM 141 1.000000** RBFOX2 ENSG00000100320 yes Homo_sapiens UGACUG 6 siRNA-mediated knockdown, UV cross-linking with HeLa nuclear extract and immunoprecipitation. S 17101796 UV cross-linking;other RRM 622 1.000000** RBM14 ENSG00000239306 no Homo_sapiens GCGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M109_0.6 0.114006 RBM14 ENSG00000239306 no Homo_sapiens GCGCGGG 7 RNAcompete C 23846655 RNAcompete RRM M109_0.6 0.225117** RBM14 ENSG00000239306 no Homo_sapiens GCGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M050_0.6 0.034676 RBM14 ENSG00000239306 no Homo_sapiens GCGCGGC 7 RNAcompete C 23846655 RNAcompete RRM M050_0.6 0.106117 RBM14 ENSG00000239306 no Homo_sapiens GCGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M050_0.6 0.084325 RBM14 ENSG00000239306 no Homo_sapiens GCGCGGG 7 RNAcompete C 23846655 RNAcompete RRM M050_0.6 0.258056** RBM24 ENSG00000112183 no Homo_sapiens AGAGUGA 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.073928 RBM24 ENSG00000112183 no Homo_sapiens UGAGUGA 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.057299 RBM24 ENSG00000112183 no Homo_sapiens AGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.174150** RBM24 ENSG00000112183 no Homo_sapiens UGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.134978 RBM24 ENSG00000112183 no Homo_sapiens AGAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.03446 RBM24 ENSG00000112183 no Homo_sapiens UGAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.026709 RBM24 ENSG00000112183 no Homo_sapiens AGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.081177 RBM24 ENSG00000112183 no Homo_sapiens UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.062918 RBM24 ENSG00000112183 no Homo_sapiens AGAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.021748 RBM24 ENSG00000112183 no Homo_sapiens UGAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.016856 RBM24 ENSG00000112183 no Homo_sapiens AGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.051231 RBM24 ENSG00000112183 no Homo_sapiens UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M175_0.6 0.039708 RBM24A ENSTNIG00000009181 no Tetraodon_nigroviridis AGUGUG 6 RNAcompete C 23846655 RNAcompete RRM M240_0.6 0.322733** RBM24A ENSTNIG00000009181 no Tetraodon_nigroviridis UGUGUG 6 RNAcompete C 23846655 RNAcompete RRM M240_0.6 0.264324 RBM25 ENSG00000119707 no Homo_sapiens AUCGGGCA 8 Fluorescence polarization assay S 23190262 other RRM;PWI 1144 1.000000** RBM25 ENSG00000119707 no Homo_sapiens CGGGCA 6 Mutational analysis, immuoprecipitation assay in HeLa cells, EMSA and competition assay with recombinant protein. S 18663000 EMSA RRM;PWI 1143 1.000000** RBM28 ENSG00000106344 no Homo_sapiens GAGUAGA 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.157009** RBM28 ENSG00000106344 no Homo_sapiens GUGUAGA 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.127322 RBM28 ENSG00000106344 no Homo_sapiens GAGUAGU 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.135904 RBM28 ENSG00000106344 no Homo_sapiens GUGUAGU 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.110207 RBM28 ENSG00000106344 no Homo_sapiens GAGUAGG 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.063611 RBM28 ENSG00000106344 no Homo_sapiens GUGUAGG 7 RNAcompete C 23846655 RNAcompete RRM M047_0.6 0.051583 RBM3 ENSG00000102317 no Homo_sapiens AAAACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.007162 RBM3 ENSG00000102317 no Homo_sapiens GAAACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.028169 RBM3 ENSG00000102317 no Homo_sapiens AAUACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.023698 RBM3 ENSG00000102317 no Homo_sapiens GAUACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.093205** RBM3 ENSG00000102317 no Homo_sapiens AAGACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.007442 RBM3 ENSG00000102317 no Homo_sapiens GAGACGA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.029271 RBM3 ENSG00000102317 no Homo_sapiens AAAACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.002896 RBM3 ENSG00000102317 no Homo_sapiens GAAACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.011389 RBM3 ENSG00000102317 no Homo_sapiens AAUACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.009581 RBM3 ENSG00000102317 no Homo_sapiens GAUACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.037683 RBM3 ENSG00000102317 no Homo_sapiens AAGACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.003009 RBM3 ENSG00000102317 no Homo_sapiens GAGACUA 7 RNAcompete C 23846655 RNAcompete RRM M048_0.6 0.011834 RBM38 ENSDARG00000058818 no Danio_rerio GAGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M238_0.6 0.095801 RBM38 ENSDARG00000058818 no Danio_rerio UAGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M238_0.6 0.033455 RBM38 ENSDARG00000058818 no Danio_rerio GUGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M238_0.6 0.224379** RBM38 ENSDARG00000058818 no Danio_rerio UUGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M238_0.6 0.078356 RBM38 ENSMUSG00000027510 no Mus_musculus GGGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.069794 RBM38 ENSMUSG00000027510 no Mus_musculus UGGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.032523 RBM38 ENSMUSG00000027510 no Mus_musculus GUGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.175531** RBM38 ENSMUSG00000027510 no Mus_musculus UUGUGUG 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.081796 RBM38 ENSMUSG00000027510 no Mus_musculus GGGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.023648 RBM38 ENSMUSG00000027510 no Mus_musculus UGGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.01102 RBM38 ENSMUSG00000027510 no Mus_musculus GUGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.059475 RBM38 ENSMUSG00000027510 no Mus_musculus UUGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M049_0.6 0.027715 RBM4 ENSG00000173933 no Homo_sapiens CCUCUUU 7 Mutagenesis, in vivo splicing assay S 21518792 other RRM;ZF_CCHC 1147 1.000000** RBM4 ENSG00000173933 no Homo_sapiens CCUUCCUU 8 Mutational analysis. S 16260624 other RRM;ZF_CCHC 1146 1.000000** RBM4 ENSG00000173933 no Homo_sapiens CGCGCGA 7 RNAcompete using recombinant protein S 19561594 SELEX RRM;ZF_CCHC s102 0.001609 RBM4 ENSG00000173933 no Homo_sapiens CGCGCGG 7 RNAcompete using recombinant protein S 19561594 SELEX RRM;ZF_CCHC s102 0.004794 RBM4 ENSG00000173933 no Homo_sapiens GCGCGCG 7 RNAcompete using recombinant protein S 19561594 SELEX RRM;ZF_CCHC s102 0.009093 RBM4 ENSG00000173933 no Homo_sapiens GCGCGGG 7 RNAcompete using recombinant protein S 19561594 SELEX RRM;ZF_CCHC s102 0.036102** RBM4 ENSG00000173933 no Homo_sapiens GCGCGGU 7 RNAcompete using recombinant protein S 19561594 SELEX RRM;ZF_CCHC s102 0.012114 RBM4 ENSG00000173933 no Homo_sapiens UCCUUCUUG 9 Mutational analysis, UV cross-linking assay with purified recombinant protein. S 16777844 UV cross-linking;other RRM;ZF_CCHC 1145 1.000000** RBM4.3 ENSDARG00000022129 no Danio_rerio ACGACG 6 RNAcompete C 23846655 RNAcompete RRM M212_0.6 0.513912** RBM4.3 ENSDARG00000022129 no Danio_rerio ACGGCG 6 RNAcompete C 23846655 RNAcompete RRM M212_0.6 0.209626 RBM41 ENSG00000089682 no Homo_sapiens AUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.050623 RBM41 ENSG00000089682 no Homo_sapiens UUACAUG 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.050015 RBM41 ENSG00000089682 no Homo_sapiens AUACUUG 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.034662 RBM41 ENSG00000089682 no Homo_sapiens UUACUUG 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.034246 RBM41 ENSG00000089682 no Homo_sapiens AUACAUU 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.155026** RBM41 ENSG00000089682 no Homo_sapiens UUACAUU 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.153166 RBM41 ENSG00000089682 no Homo_sapiens AUACUUU 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.10615 RBM41 ENSG00000089682 no Homo_sapiens UUACUUU 7 RNAcompete C 23846655 RNAcompete RRM M051_0.6 0.104876 RBM42 ENSG00000126254 no Homo_sapiens AACUAAG 7 RNAcompete C 23846655 RNAcompete RRM M142_0.6 0.273579** RBM42 ENSG00000126254 no Homo_sapiens AACUACG 7 RNAcompete C 23846655 RNAcompete RRM M142_0.6 0.166657 RBM42 ENSXETG00000017599 no Xenopus_tropicalis AACUAC 6 RNAcompete C 23846655 RNAcompete RRM M237_0.6 0.530727** RBM42 ENSXETG00000017599 no Xenopus_tropicalis UACUAC 6 RNAcompete C 23846655 RNAcompete RRM M237_0.6 0.141564 RBM45 ENSMUSG00000042369 no Mus_musculus GACGAAA 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.033001 RBM45 ENSMUSG00000042369 no Mus_musculus GACGACA 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.095575** RBM45 ENSMUSG00000042369 no Mus_musculus GACGAAC 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.020846 RBM45 ENSMUSG00000042369 no Mus_musculus GACGACC 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.060375 RBM45 ENSMUSG00000042369 no Mus_musculus GACGAAG 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.013353 RBM45 ENSMUSG00000042369 no Mus_musculus GACGACG 7 RNAcompete C 23846655 RNAcompete RRM M209_0.6 0.038673 RBM46 ENSG00000151962 no Homo_sapiens AAUCAAA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.077606 RBM46 ENSG00000151962 no Homo_sapiens GAUCAAA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.023399 RBM46 ENSG00000151962 no Homo_sapiens AAUGAAA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.049242 RBM46 ENSG00000151962 no Homo_sapiens GAUGAAA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.014847 RBM46 ENSG00000151962 no Homo_sapiens AAUCAUA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.029572 RBM46 ENSG00000151962 no Homo_sapiens GAUCAUA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.008916 RBM46 ENSG00000151962 no Homo_sapiens AAUGAUA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.018764 RBM46 ENSG00000151962 no Homo_sapiens GAUGAUA 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.005658 RBM46 ENSG00000151962 no Homo_sapiens AAUCAAU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.100928** RBM46 ENSG00000151962 no Homo_sapiens GAUCAAU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.030431 RBM46 ENSG00000151962 no Homo_sapiens AAUGAAU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.06404 RBM46 ENSG00000151962 no Homo_sapiens GAUGAAU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.019309 RBM46 ENSG00000151962 no Homo_sapiens AAUCAUU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.038459 RBM46 ENSG00000151962 no Homo_sapiens GAUCAUU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.011596 RBM46 ENSG00000151962 no Homo_sapiens AAUGAUU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.024403 RBM46 ENSG00000151962 no Homo_sapiens GAUGAUU 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.007358 RBM46 ENSG00000151962 no Homo_sapiens AAUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.050703 RBM46 ENSG00000151962 no Homo_sapiens GAUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.015288 RBM46 ENSG00000151962 no Homo_sapiens AAUGAAG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.032172 RBM46 ENSG00000151962 no Homo_sapiens GAUGAAG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.0097 RBM46 ENSG00000151962 no Homo_sapiens AAUCAUG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.019321 RBM46 ENSG00000151962 no Homo_sapiens GAUCAUG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.005825 RBM46 ENSG00000151962 no Homo_sapiens AAUGAUG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.012259 RBM46 ENSG00000151962 no Homo_sapiens GAUGAUG 7 RNAcompete C 23846655 RNAcompete RRM M052_0.6 0.003696 RBM47 ENSGALG00000014267 no Gallus_gallus GAUGAA 6 RNAcompete C 23846655 RNAcompete RRM M234_0.6 0.289319 RBM47 ENSGALG00000014267 no Gallus_gallus GAUGAU 6 RNAcompete C 23846655 RNAcompete RRM M234_0.6 0.412244** RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAAA 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.061562 RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAUA 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.084869 RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAAU 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.09241 RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAUU 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.127396** RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAAC 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.063999 RBM47 ENSXETG00000012802 no Xenopus_tropicalis GAUGAUC 7 RNAcompete C 23846655 RNAcompete RRM M235_0.6 0.088228 RBM5 ENSG00000003756 no Homo_sapiens AAAAAAA 7 Homopolymer binding assay with recombinant protein. S 11029660 other ZF_RANBP 1151 1.000000** RBM5 ENSG00000003756 no Homo_sapiens AGGUAA 6 Chemical shift mapping (NMR) S 22162216 SOLUTION NMR ZF_RANBP 1152 1.000000** RBM5 ENSG00000003756 no Homo_sapiens CCCCCCC 7 Homopolymer binding assay with recombinant protein. S 11029660 other ZF_RANBP 1150 1.000000** RBM5 ENSG00000003756 no Homo_sapiens CUCUUCUCU 9 EMSA and UV cross-linking with recombinant protein using wt and mutated oligomers and RNA competitors. S 18840686 UV cross-linking;EMSA ZF_RANBP 1148 1.000000** RBM5 ENSG00000003756 no Homo_sapiens GAAGGAA 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.177741** RBM5 ENSG00000003756 no Homo_sapiens GAGGGAA 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.056017 RBM5 ENSG00000003756 no Homo_sapiens GAAGGUA 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.070107 RBM5 ENSG00000003756 no Homo_sapiens GAGGGUA 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.022095 RBM5 ENSG00000003756 no Homo_sapiens GAAGGAG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.061985 RBM5 ENSG00000003756 no Homo_sapiens GAGGGAG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.019535 RBM5 ENSG00000003756 no Homo_sapiens GAAGGUG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.024449 RBM5 ENSG00000003756 no Homo_sapiens GAGGGUG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M053_0.6 0.007705 RBM5 ENSG00000003756 no Homo_sapiens GGGGGG 6 Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein S 22517726 other ZF_RANBP 1153 1.000000** RBM5 ENSG00000003756 no Homo_sapiens GGGGGGG 7 Homopolymer binding assay with recombinant protein. S 11029660 other ZF_RANBP 1149 1.000000** RBM5 ENSG00000003756 no Homo_sapiens GGUGGU 6 Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein S 22517726 other ZF_RANBP 1154 1.000000** RBM5 ENSG00000003756 no Homo_sapiens CAAGGAG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M145_0.6 0.052852 RBM5 ENSG00000003756 no Homo_sapiens GAAGGAG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M145_0.6 0.118025** RBM5 ENSG00000003756 no Homo_sapiens CAAGGGG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M145_0.6 0.016513 RBM5 ENSG00000003756 no Homo_sapiens GAAGGGG 7 RNAcompete C 23846655 RNAcompete ZF_RANBP M145_0.6 0.036876 RBM6 ENSG00000004534 no Homo_sapiens AAUCCAA 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.109568 RBM6 ENSG00000004534 no Homo_sapiens UAUCCAA 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.042489 RBM6 ENSG00000004534 no Homo_sapiens CAUCCAA 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.066668 RBM6 ENSG00000004534 no Homo_sapiens AAUCCAG 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.216403** RBM6 ENSG00000004534 no Homo_sapiens UAUCCAG 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.083918 RBM6 ENSG00000004534 no Homo_sapiens CAUCCAG 7 RNAcompete C 23846655 RNAcompete RRM M161_0.6 0.131674 RBM8A ENSG00000265241 no Homo_sapiens ACGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.011013 RBM8A ENSG00000265241 no Homo_sapiens GCGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.03274 RBM8A ENSG00000265241 no Homo_sapiens AUGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.004743 RBM8A ENSG00000265241 no Homo_sapiens GUGCGCC 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.0141 RBM8A ENSG00000265241 no Homo_sapiens ACGCGCU 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.011327 RBM8A ENSG00000265241 no Homo_sapiens GCGCGCU 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.033672 RBM8A ENSG00000265241 no Homo_sapiens AUGCGCU 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.004878 RBM8A ENSG00000265241 no Homo_sapiens GUGCGCU 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.014502 RBM8A ENSG00000265241 no Homo_sapiens ACGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.043038 RBM8A ENSG00000265241 no Homo_sapiens GCGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.127946** RBM8A ENSG00000265241 no Homo_sapiens AUGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.018536 RBM8A ENSG00000265241 no Homo_sapiens GUGCGCG 7 RNAcompete C 23846655 RNAcompete RRM M054_0.6 0.055103 RBMS1 ENSG00000153250 no Homo_sapiens GAUAUAC 7 RNAcompete C 23846655 RNAcompete RRM M143_0.6 0.057032 RBMS1 ENSG00000153250 no Homo_sapiens UAUAUAC 7 RNAcompete C 23846655 RNAcompete RRM M143_0.6 0.173794** RBMS1 ENSG00000153250 no Homo_sapiens GAUAUAG 7 RNAcompete C 23846655 RNAcompete RRM M143_0.6 0.037326 RBMS1 ENSG00000153250 no Homo_sapiens UAUAUAG 7 RNAcompete C 23846655 RNAcompete RRM M143_0.6 0.113742 RBMS3 ENSG00000144642 no Homo_sapiens AAUAUA 6 RNAcompete C 23846655 RNAcompete RRM M164_0.6 0.10803 RBMS3 ENSG00000144642 no Homo_sapiens UAUAUA 6 RNAcompete C 23846655 RNAcompete RRM M164_0.6 0.353553** RBMS3 ENSG00000144642 no Homo_sapiens CAUAUA 6 RNAcompete C 23846655 RNAcompete RRM M164_0.6 0.107938 RBMS3 ENSG00000144642 no Homo_sapiens AUAUAGA 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.05785 RBMS3 ENSG00000144642 no Homo_sapiens CUAUAGA 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.020121 RBMS3 ENSG00000144642 no Homo_sapiens AUAUAUA 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.151988** RBMS3 ENSG00000144642 no Homo_sapiens CUAUAUA 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.052863 RBMS3 ENSG00000144642 no Homo_sapiens AUAUAGC 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.039342 RBMS3 ENSG00000144642 no Homo_sapiens CUAUAGC 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.013684 RBMS3 ENSG00000144642 no Homo_sapiens AUAUAUC 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.103361 RBMS3 ENSG00000144642 no Homo_sapiens CUAUAUC 7 RNAcompete C 23846655 RNAcompete RRM M055_0.6 0.03595 RBMX ENSG00000147274 no Homo_sapiens AAAAU 5 NMR spectroscopy, isothermal titration calorimetry. EMSA with recombinat protein and other competitor protein (HTra2beta1). S 24692659 SOLUTION NMR;EMSA RRM 847 1.000000** RBMX ENSG00000147274 no Homo_sapiens ACCAAA 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 844 1.000000** RBMX ENSG00000147274 no Homo_sapiens AUCAAA 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 842 1.000000** RBMX ENSG00000147274 no Homo_sapiens AUCCCA 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 848 1.000000** RBMX ENSG00000147274 no Homo_sapiens AUCCCC 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 849 1.000000** RBMX ENSG00000147274 no Homo_sapiens UAAGAC 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 843 1.000000** RBMX ENSG00000147274 no Homo_sapiens UCAAA 5 SOLUTION NMR PDB 24692659 SOLUTION NMR RRM 526 1.000000** RBMX ENSG00000147274 no Homo_sapiens UCAAAA 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 845 1.000000** RBMY1A1 ENSG00000234414 no Homo_sapiens ACAAGAC 7 SOLUTION NMR PDB PubMed ID is not available SOLUTION NMR RRM 410 1.000000** RBMY1A1 ENSG00000234414 no Homo_sapiens CACAA 5 SELEX C 17318228 SELEX RRM M246_0.6 0.315789 RBMY1A1 ENSG00000234414 no Homo_sapiens CUCAA 5 SELEX C 17318228 SELEX RRM M246_0.6 0.647895** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCAAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUAAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCUAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUUAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCCAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUCAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCGAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUGAA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCAUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUAUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCUUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUUUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCCUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUCUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCGUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUGUA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCACA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUACA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCUCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUUCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCCCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUCCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCGCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUGCA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCAGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUAGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCUGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUUGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCCGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUCGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCCGGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster AUCUGGA 7 SELEX C 7664738 SELEX RRM 4 0.031230** RBP1 FBGN0260944 no Drosophila_melanogaster ACAACUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** RBP1 FBGN0260944 no Drosophila_melanogaster UCAACUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** RBP1 FBGN0260944 no Drosophila_melanogaster GCAACUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** RBP1 FBGN0260944 no Drosophila_melanogaster ACAUCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** RBP1 FBGN0260944 no Drosophila_melanogaster UCAUCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** RBP1 FBGN0260944 no Drosophila_melanogaster GCAUCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** RBP1 FBGN0260944 no Drosophila_melanogaster ACAGCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** RBP1 FBGN0260944 no Drosophila_melanogaster UCAGCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** RBP1 FBGN0260944 no Drosophila_melanogaster GCAGCUUUA 9 SELEX C 7664738 SELEX RRM 37 0.110865** RBP1 FBGN0260944 no Drosophila_melanogaster ACAACAA 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.109392 RBP1 FBGN0260944 no Drosophila_melanogaster UCAACAA 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.037632 RBP1 FBGN0260944 no Drosophila_melanogaster ACAACGA 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.202494** RBP1 FBGN0260944 no Drosophila_melanogaster UCAACGA 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.069661 RBP1 FBGN0260944 no Drosophila_melanogaster ACAACAG 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.068421 RBP1 FBGN0260944 no Drosophila_melanogaster UCAACAG 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.023538 RBP1 FBGN0260944 no Drosophila_melanogaster ACAACGG 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.126654 RBP1 FBGN0260944 no Drosophila_melanogaster UCAACGG 7 RNAcompete C 23846655 RNAcompete RRM M056_0.6 0.043571 RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAACA 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.036383 RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAUCA 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.035065 RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAGCA 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.018335 RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAACG 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.131710** RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAUCG 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.126941 RBP1-LIKE FBGN0030479 no Drosophila_melanogaster AUCAGCG 7 RNAcompete C 23846655 RNAcompete RRM M121_0.6 0.066375 RBP9 FBGN0010263 no Drosophila_melanogaster UUAAGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.033736 RBP9 FBGN0010263 no Drosophila_melanogaster UUUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.087785 RBP9 FBGN0010263 no Drosophila_melanogaster UUGAGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.02762 RBP9 FBGN0010263 no Drosophila_melanogaster UUAUGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.03322 RBP9 FBGN0010263 no Drosophila_melanogaster UUUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.086442 RBP9 FBGN0010263 no Drosophila_melanogaster UUGUGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.027197 RBP9 FBGN0010263 no Drosophila_melanogaster UUAGGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.078178 RBP9 FBGN0010263 no Drosophila_melanogaster UUUGGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.203428** RBP9 FBGN0010263 no Drosophila_melanogaster UUGGGUU 7 RNAcompete C 23846655 RNAcompete RRM M124_0.6 0.064005 RC3H1 ENSG00000135870 no Homo_sapiens CCUUCUGUG 9 X-RAY DIFFRACTION PDB 25026078 X-RAY DIFFRACTION ZF_CCCH 354 1.000000** RC3H1 ENSG00000135870 no Homo_sapiens UCCCUUCUGUG 11 X-RAY DIFFRACTION PDB 25026078 X-RAY DIFFRACTION ZF_CCCH 467 1.000000** RC3H1 ENSG00000135870 no Homo_sapiens UUUC 4 X-RAY DIFFRACTION PDB 25026078 X-RAY DIFFRACTION ZF_CCCH 531 1.000000** RC3H1 ENSMUSG00000040423 no Mus_musculus UUUCUGUG 8 X-RAY DIFFRACTION PDB 25026077 X-RAY DIFFRACTION ZF_CCCH 528 1.000000** RC3H1 ENSMUSG00000040423 no Mus_musculus UUUUCUGUG 9 X-RAY DIFFRACTION PDB 25026077 X-RAY DIFFRACTION ZF_CCCH 350 1.000000** REF2 FBGN0032439 no Drosophila_melanogaster AGAAGAA 7 RNAcompete C 23846655 RNAcompete RRM M057_0.6 0.035254 REF2 FBGN0032439 no Drosophila_melanogaster AGAAGGA 7 RNAcompete C 23846655 RNAcompete RRM M057_0.6 0.094666 REF2 FBGN0032439 no Drosophila_melanogaster AGAAGAC 7 RNAcompete C 23846655 RNAcompete RRM M057_0.6 0.071279 REF2 FBGN0032439 no Drosophila_melanogaster AGAAGGC 7 RNAcompete C 23846655 RNAcompete RRM M057_0.6 0.191404** RIN FBGN0015778 no Drosophila_melanogaster AAAUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.014227 RIN FBGN0015778 no Drosophila_melanogaster GAAUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.01141 RIN FBGN0015778 no Drosophila_melanogaster AGAUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.025738 RIN FBGN0015778 no Drosophila_melanogaster GGAUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.020642 RIN FBGN0015778 no Drosophila_melanogaster AAUUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.006743 RIN FBGN0015778 no Drosophila_melanogaster GAUUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.005408 RIN FBGN0015778 no Drosophila_melanogaster AGUUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.0122 RIN FBGN0015778 no Drosophila_melanogaster GGUUGAA 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.009784 RIN FBGN0015778 no Drosophila_melanogaster AAAUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.041075 RIN FBGN0015778 no Drosophila_melanogaster GAAUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.032942 RIN FBGN0015778 no Drosophila_melanogaster AGAUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.074308** RIN FBGN0015778 no Drosophila_melanogaster GGAUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.059596 RIN FBGN0015778 no Drosophila_melanogaster AAUUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.019469 RIN FBGN0015778 no Drosophila_melanogaster GAUUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.015615 RIN FBGN0015778 no Drosophila_melanogaster AGUUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.035222 RIN FBGN0015778 no Drosophila_melanogaster GGUUGAU 7 RNAcompete C 23846655 RNAcompete RRM M129_0.6 0.028248 RNA15 YGL044C no Saccharomyces_cerevisiae AAUAAU 6 SOLUTION NMR PDB 20600122 SOLUTION NMR RRM 362 1.000000** RNA15 YGL044C no Saccharomyces_cerevisiae UAUAUAUAA 9 SOLUTION NMR PDB 20600122 SOLUTION NMR RRM 434 1.000000** RNA15 YGL044C no Saccharomyces_cerevisiae UGUUGU 6 NMR R 20097654 NMR RRM 139 1.000000** RNA15 YGL044C no Saccharomyces_cerevisiae UGUUUG 6 NMR R 20097654 NMR RRM 88 1.000000** RNA15 YGL044C no Saccharomyces_cerevisiae UGCGUAUUCUCC 12 SELEX C 9199325 SELEX RRM M299_0.6 0.365000** RNA15 YGL044C no Saccharomyces_cerevisiae UGUGUAUUCUCC 12 SELEX C 9199325 SELEX RRM M299_0.6 0.365000** RNA15 YGL044C no Saccharomyces_cerevisiae UGCGUAUUUUCC 12 SELEX C 9199325 SELEX RRM M299_0.6 0.125 RNA15 YGL044C no Saccharomyces_cerevisiae UGUGUAUUUUCC 12 SELEX C 9199325 SELEX RRM M299_0.6 0.125 RNA15 YGL044C no Saccharomyces_cerevisiae UUUUUU 6 NMR R 20097654 NMR RRM 146 1.000000** RNASEL ENSG00000135828 no Homo_sapiens AAAA 4 X-RAY DIFFRACTION PDB 24578532 X-RAY DIFFRACTION ANK;PKINASE;RIBONUC_2 563 1.000000** RNP4F FBGN0014024 no Drosophila_melanogaster AGAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.085484 RNP4F FBGN0014024 no Drosophila_melanogaster AGAUAAA 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.027153 RNP4F FBGN0014024 no Drosophila_melanogaster AGAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.036863 RNP4F FBGN0014024 no Drosophila_melanogaster AGAUAGA 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.011709 RNP4F FBGN0014024 no Drosophila_melanogaster AGAGAAG 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.127344** RNP4F FBGN0014024 no Drosophila_melanogaster AGAUAAG 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.04045 RNP4F FBGN0014024 no Drosophila_melanogaster AGAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.054914 RNP4F FBGN0014024 no Drosophila_melanogaster AGAUAGG 7 RNAcompete C 23846655 RNAcompete RRM M058_0.6 0.017443 RO3G_00049 RO3G_00049 no Rhizopus_oryzae AGGGGAA 7 RNAcompete C 23846655 RNAcompete RRM M184_0.6 0.334178** RO3G_00049 RO3G_00049 no Rhizopus_oryzae GGGGGAA 7 RNAcompete C 23846655 RNAcompete RRM M184_0.6 0.088399 ROX8 FBGN0005649 no Drosophila_melanogaster ACAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M139_0.6 0.056263 ROX8 FBGN0005649 no Drosophila_melanogaster CCAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M139_0.6 0.196511** ROX8 FBGN0005649 no Drosophila_melanogaster AUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M139_0.6 0.020241 ROX8 FBGN0005649 no Drosophila_melanogaster CUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M139_0.6 0.070695 RPB2 YOR151C no Saccharomyces_cerevisiae CCAGGC 6 X-RAY DIFFRACTION PDB 18004386 X-RAY DIFFRACTION RNA_POL_RPB2 523 1.000000** RPB2 YOR151C no Saccharomyces_cerevisiae CCUGG 5 X-RAY DIFFRACTION PDB 18004386 X-RAY DIFFRACTION RNA_POL_RPB2 340 1.000000** RPO21 YDL140C no Saccharomyces_cerevisiae CGCC 4 X-RAY DIFFRACTION PDB 18004386 X-RAY DIFFRACTION RNA_POL_RPB1 462 1.000000** RRP6 YOR001W no Saccharomyces_cerevisiae AAAA 4 X-RAY DIFFRACTION PDB 25043052 X-RAY DIFFRACTION RNASE_PH;ECR1_N;EXOSC1;PMC2NT;HRDC 396 1.000000** RSF1 FBGN0011305 no Drosophila_melanogaster AAACGCGCA 9 SELEX R 10325428 SELEX RRM 106 0.124069** RSF1 FBGN0011305 no Drosophila_melanogaster AAUCGCGCA 9 SELEX R 10325428 SELEX RRM 106 0.124069** RSF1 FBGN0011305 no Drosophila_melanogaster AAACGCGUA 9 SELEX R 10325428 SELEX RRM 106 0.124069** RSF1 FBGN0011305 no Drosophila_melanogaster AAUCGCGUA 9 SELEX R 10325428 SELEX RRM 106 0.124069** RSF1 FBGN0011305 no Drosophila_melanogaster AAACGCGCG 9 SELEX R 10325428 SELEX RRM 106 0.124069** RSF1 FBGN0011305 no Drosophila_melanogaster AAUCGCGCG 9 SELEX R 10325428 SELEX RRM 106 0.124069** RSF1 FBGN0011305 no Drosophila_melanogaster AAACGCGUG 9 SELEX R 10325428 SELEX RRM 106 0.124069** RSF1 FBGN0011305 no Drosophila_melanogaster AAUCGCGUG 9 SELEX R 10325428 SELEX RRM 106 0.124069** RSF1 FBGN0011305 no Drosophila_melanogaster ACGACGA 7 RNAcompete C 23846655 RNAcompete RRM M059_0.6 0.389231** RSF1 FBGN0011305 no Drosophila_melanogaster ACGACGC 7 RNAcompete C 23846655 RNAcompete RRM M059_0.6 0.143637 RSF1 FBGN0011305 no Drosophila_melanogaster ACGACGG 7 RNAcompete C 23846655 RNAcompete RRM M059_0.6 0.146673 RSF1 FBGN0011305 no Drosophila_melanogaster CAACGACAA 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster UAACGACAA 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster CAUCGACAA 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster UAUCGACAA 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster CAACGACGA 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster UAACGACGA 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster CAUCGACGA 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster UAUCGACGA 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster CAACGACAG 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster UAACGACAG 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster CAUCGACAG 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster UAUCGACAG 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster CAACGACGG 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster UAACGACGG 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster CAUCGACGG 9 SELEX R 10325428 SELEX RRM 170 0.062189** RSF1 FBGN0011305 no Drosophila_melanogaster UAUCGACGG 9 SELEX R 10325428 SELEX RRM 170 0.062189** RUMP FBGN0260010 no Drosophila_melanogaster GGAGG 5 RIP-chip C 15781475 genome-wide in vivo immunoprecipitation RRM 1 1.000000** SAMD4A ENSG00000020577 no Homo_sapiens GCGGGAA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.020119 SAMD4A ENSG00000020577 no Homo_sapiens GCUGGAA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.045805 SAMD4A ENSG00000020577 no Homo_sapiens GCGGGUA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.007038 SAMD4A ENSG00000020577 no Homo_sapiens GCUGGUA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.016023 SAMD4A ENSG00000020577 no Homo_sapiens GCGGGCA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.019017 SAMD4A ENSG00000020577 no Homo_sapiens GCUGGCA 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.043294 SAMD4A ENSG00000020577 no Homo_sapiens GCGGGAC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.064869 SAMD4A ENSG00000020577 no Homo_sapiens GCUGGAC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.147685** SAMD4A ENSG00000020577 no Homo_sapiens GCGGGUC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.022692 SAMD4A ENSG00000020577 no Homo_sapiens GCUGGUC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.051662 SAMD4A ENSG00000020577 no Homo_sapiens GCGGGCC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.061314 SAMD4A ENSG00000020577 no Homo_sapiens GCUGGCC 7 RNAcompete C 23846655 RNAcompete SAM M061_0.6 0.139592 SAP-49 WBGENE00004723 no Caenorhabditis_elegans CGUGUGAG 8 SELEX R 9163526 SELEX RRM 145_9163526.pfm 0.139592** SART3 ENSG00000075856 no Homo_sapiens AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M062_0.6 0.131421 SART3 ENSG00000075856 no Homo_sapiens AGAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M062_0.6 0.207659** SART3 ENSG00000075856 no Homo_sapiens AAAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M062_0.6 0.038989 SART3 ENSG00000075856 no Homo_sapiens AGAAAAC 7 RNAcompete C 23846655 RNAcompete RRM M062_0.6 0.061608 SF1 ENSG00000168066 no Homo_sapiens ACAGUCA 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1206 1.000000** SF1 ENSG00000168066 no Homo_sapiens ACUUAU 6 UV crosslinking with recombinant protein S 24722255 UV cross-linking KH;ZF_CCHC 1209 1.000000** SF1 ENSG00000168066 no Homo_sapiens AUACUAACAA 10 SOLUTION NMR PDB 11691992 SOLUTION NMR KH;ZF_CCHC 495 1.000000** SF1 ENSG00000168066 no Homo_sapiens AUUAAC 6 EMSA with WT and mutated sequences and UV crosslinking with recombinant protein S 24722255 UV cross-linking;EMSA KH;ZF_CCHC 1208 1.000000** SF1 ENSG00000168066 no Homo_sapiens CACAGAC 7 EMSA with recombinant protein. S 15496424 EMSA KH;ZF_CCHC 1190 1.000000** SF1 ENSG00000168066 no Homo_sapiens GACUAAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1199 1.000000** SF1 ENSG00000168066 no Homo_sapiens UACGAAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1205 1.000000** SF1 ENSG00000168066 no Homo_sapiens UACUAAC 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1196 1.000000** SF1 ENSG00000168066 no Homo_sapiens UACUAAC 7 NMR titration using recombinant protein S 11691992 SOLUTION NMR KH;ZF_CCHC 1207 1.000000** SF1 ENSG00000168066 no Homo_sapiens UACUAAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1197 1.000000** SF1 ENSG00000168066 no Homo_sapiens UACUAAG 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1203 1.000000** SF1 ENSG00000168066 no Homo_sapiens UACUAAU 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1198 1.000000** SF1 ENSG00000168066 no Homo_sapiens UACUAGC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1204 1.000000** SF1 ENSG00000168066 no Homo_sapiens UACUGAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1201 1.000000** SF1 ENSG00000168066 no Homo_sapiens UAGUAAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1200 1.000000** SF1 ENSG00000168066 no Homo_sapiens UAUACUAACAA 11 EMSA R 11691992 EMSA KH;ZF_CCHC 120 1.000000** SF1 ENSG00000168066 no Homo_sapiens UGCUGAC 7 Footprinting assay, EMSA, competition assay with purified protein S 9512519 EMSA KH;ZF_CCHC 1184 1.000000** SF1 ENSG00000168066 no Homo_sapiens UGCUGAC 7 Reporter gene assay using recombinant protein S 11438677 other KH;ZF_CCHC 1202 1.000000** SF1 ENSG00000168066 no Homo_sapiens UGCUGCC 7 Footprinting assay, EMSA, competition assay with purified protein S 9512519 EMSA KH;ZF_CCHC 1185 1.000000** SF1 ENSG00000168066 yes Homo_sapiens ACUAAU 6 UV crosslinking with recombinant protein S 24722255 UV cross-linking KH;ZF_CCHC 1210 1.000000** SF1 ENSG00000168066 yes Homo_sapiens CACCGAC 7 EMSA with recombinant protein. S 15496424 EMSA KH;ZF_CCHC 1189 1.000000** SF1 ENSG00000168066 yes Homo_sapiens CACUGAC 7 EMSA with recombinant protein. S 15496424 EMSA KH;ZF_CCHC 1187 1.000000** SF1 ENSG00000168066 yes Homo_sapiens CGCUGAC 7 EMSA with recombinant protein. S 15496424 EMSA KH;ZF_CCHC 1188 1.000000** SF1 ENSG00000168066 yes Homo_sapiens GACUAAC 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1191 1.000000** SF1 ENSG00000168066 yes Homo_sapiens UACUAAC 7 EMSA with recombinant protein. S 15496424 EMSA KH;ZF_CCHC 1186 1.000000** SF1 ENSG00000168066 yes Homo_sapiens UACUAAG 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1192 1.000000** SF1 ENSG00000168066 yes Homo_sapiens UACUGAC 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1193 1.000000** SF1 ENSG00000168066 yes Homo_sapiens UAGUAAG 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1194 1.000000** SF1 ENSG00000168066 yes Homo_sapiens UGCUAAC 7 EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences. S 9182766 EMSA KH;ZF_CCHC 1195 1.000000** SF2 FBGN0040284 no Drosophila_melanogaster AGGAGGA 7 RNAcompete C 23846655 RNAcompete RRM M064_0.6 0.172651** SF2 FBGN0040284 no Drosophila_melanogaster UGGAGGA 7 RNAcompete C 23846655 RNAcompete RRM M064_0.6 0.091729 SF2 FBGN0040284 no Drosophila_melanogaster GGGAGGA 7 RNAcompete C 23846655 RNAcompete RRM M064_0.6 0.134357 SF3B4 ENSDARG00000018574 no Danio_rerio CAAAAG 6 RNAcompete C 23846655 RNAcompete RRM M195_0.6 0.864306** SFPQ ENSG00000116560 no Homo_sapiens AAGGACC 7 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s26 0.002147 SFPQ ENSG00000116560 no Homo_sapiens AGAGGAA 7 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s26 0.019068** SFPQ ENSG00000116560 no Homo_sapiens AGAGGUA 7 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s26 0.019068** SFPQ ENSG00000116560 no Homo_sapiens GAAGAGGAA 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.001898 SFPQ ENSG00000116560 no Homo_sapiens GAAGGA 6 RNA pulldown assay in HeLa nuclear extracts S 24632473 other RRM 1136 1.000000** SFPQ ENSG00000116560 no Homo_sapiens GAGAGGA 7 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s26 0.002147 SFPQ ENSG00000116560 no Homo_sapiens GGACUGGGA 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.000051 SFPQ ENSG00000116560 no Homo_sapiens GGAGGAAC 8 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s24 0.001434 SFPQ ENSG00000116560 no Homo_sapiens GGAGGG 6 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s69 1.000000** SFPQ ENSG00000116560 no Homo_sapiens GGGGGGGAUC 10 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s72 1.000000** SFPQ ENSG00000116560 no Homo_sapiens GGUAAGAGC 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.000508 SFPQ ENSG00000116560 no Homo_sapiens GUAAUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.005488 SFPQ ENSG00000116560 no Homo_sapiens UUAAUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.001529 SFPQ ENSG00000116560 no Homo_sapiens GUGAUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.004439 SFPQ ENSG00000116560 no Homo_sapiens UUGAUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.001237 SFPQ ENSG00000116560 no Homo_sapiens GUAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.019272 SFPQ ENSG00000116560 no Homo_sapiens UUAGUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.00537 SFPQ ENSG00000116560 no Homo_sapiens GUGGUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.01559 SFPQ ENSG00000116560 no Homo_sapiens UUGGUGG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.004344 SFPQ ENSG00000116560 no Homo_sapiens GUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.003007 SFPQ ENSG00000116560 no Homo_sapiens UUAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.000838 SFPQ ENSG00000116560 no Homo_sapiens GUGAUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.002432 SFPQ ENSG00000116560 no Homo_sapiens UUGAUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.000678 SFPQ ENSG00000116560 no Homo_sapiens GUAGUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.010558 SFPQ ENSG00000116560 no Homo_sapiens UUAGUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.002942 SFPQ ENSG00000116560 no Homo_sapiens GUGGUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.00854 SFPQ ENSG00000116560 no Homo_sapiens UUGGUUG 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.00238 SFPQ ENSG00000116560 no Homo_sapiens GUAAUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.011803 SFPQ ENSG00000116560 no Homo_sapiens UUAAUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.003289 SFPQ ENSG00000116560 no Homo_sapiens GUGAUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.009548 SFPQ ENSG00000116560 no Homo_sapiens UUGAUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.002661 SFPQ ENSG00000116560 no Homo_sapiens GUAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.041449** SFPQ ENSG00000116560 no Homo_sapiens UUAGUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.01155 SFPQ ENSG00000116560 no Homo_sapiens GUGGUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.033529 SFPQ ENSG00000116560 no Homo_sapiens UUGGUGU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.009343 SFPQ ENSG00000116560 no Homo_sapiens GUAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.006466 SFPQ ENSG00000116560 no Homo_sapiens UUAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.001802 SFPQ ENSG00000116560 no Homo_sapiens GUGAUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.005231 SFPQ ENSG00000116560 no Homo_sapiens UUGAUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.001457 SFPQ ENSG00000116560 no Homo_sapiens GUAGUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.022707 SFPQ ENSG00000116560 no Homo_sapiens UUAGUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.006327 SFPQ ENSG00000116560 no Homo_sapiens GUGGUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.018368 SFPQ ENSG00000116560 no Homo_sapiens UUGGUUU 7 RNAcompete C 23846655 RNAcompete RRM M168_0.6 0.005118 SFPQ ENSG00000116560 no Homo_sapiens UAAGGGAUC 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.000192 SFPQ ENSG00000116560 no Homo_sapiens UAGAGAGG 8 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s24 0.002147 SFPQ ENSG00000116560 no Homo_sapiens UAGAUCGGAA 10 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s71 1.000000** SFPQ ENSG00000116560 no Homo_sapiens UAGGGGGAC 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.001267 SFPQ ENSG00000116560 no Homo_sapiens UCUAAGGAA 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.000943 SFPQ ENSG00000116560 no Homo_sapiens UGCAGGCA 8 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s24 0.003215 SFPQ ENSG00000116560 no Homo_sapiens UGGAAGAAC 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.003158** SFPQ ENSG00000116560 no Homo_sapiens UGGAGAGGAAC 11 SELEX R 12403470 SELEX RRM 42 1.000000** SFPQ ENSG00000116560 no Homo_sapiens UGGAGGAC 8 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s24 0.025340** SFPQ ENSG00000116560 no Homo_sapiens UGGUCUGGAGC 11 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s70 1.000000** SFPQ ENSG00000116560 no Homo_sapiens UUGAAGCAA 9 SELEX of 20nt random with recombinant protein. Consensus motif: UGGAGAGGAAC. S 12403470 SELEX RRM s25 0.000356 SFPQ ENSG00000116560 no Homo_sapiens UUUUUUU 7 RNA affinity chromatography confirmed by UV crosslink and Western blot using HeLa nuclear extracts. S 8449401 RNA affinity chromatography/purification;UV cross-linking RRM 1135 1.000000** SHEP FBGN0052423 no Drosophila_melanogaster AUAUUAA 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.159019** SHEP FBGN0052423 no Drosophila_melanogaster AUAUUUA 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.105032 SHEP FBGN0052423 no Drosophila_melanogaster AUAUUAU 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.039212 SHEP FBGN0052423 no Drosophila_melanogaster AUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.0259 SHEP FBGN0052423 no Drosophila_melanogaster AUAUUAG 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.04372 SHEP FBGN0052423 no Drosophila_melanogaster AUAUUUG 7 RNAcompete C 23846655 RNAcompete RRM M066_0.6 0.028877 SHEP FBGN0052423 no Drosophila_melanogaster AAUAUAA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.009745 SHEP FBGN0052423 no Drosophila_melanogaster UAUAUAA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.035244 SHEP FBGN0052423 no Drosophila_melanogaster AAUUUAA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.00289 SHEP FBGN0052423 no Drosophila_melanogaster UAUUUAA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.010452 SHEP FBGN0052423 no Drosophila_melanogaster AAUAUUA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.032323 SHEP FBGN0052423 no Drosophila_melanogaster UAUAUUA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.116899** SHEP FBGN0052423 no Drosophila_melanogaster AAUUUUA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.009585 SHEP FBGN0052423 no Drosophila_melanogaster UAUUUUA 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.034666 SHEP FBGN0052423 no Drosophila_melanogaster AAUAUAU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002241 SHEP FBGN0052423 no Drosophila_melanogaster UAUAUAU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.008106 SHEP FBGN0052423 no Drosophila_melanogaster AAUUUAU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.000665 SHEP FBGN0052423 no Drosophila_melanogaster UAUUUAU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002404 SHEP FBGN0052423 no Drosophila_melanogaster AAUAUUU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.007434 SHEP FBGN0052423 no Drosophila_melanogaster UAUAUUU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.026886 SHEP FBGN0052423 no Drosophila_melanogaster AAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002205 SHEP FBGN0052423 no Drosophila_melanogaster UAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.007973 SHEP FBGN0052423 no Drosophila_melanogaster AAUAUAG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002254 SHEP FBGN0052423 no Drosophila_melanogaster UAUAUAG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.008151 SHEP FBGN0052423 no Drosophila_melanogaster AAUUUAG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.000668 SHEP FBGN0052423 no Drosophila_melanogaster UAUUUAG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002417 SHEP FBGN0052423 no Drosophila_melanogaster AAUAUUG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.007476 SHEP FBGN0052423 no Drosophila_melanogaster UAUAUUG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.027037 SHEP FBGN0052423 no Drosophila_melanogaster AAUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.002217 SHEP FBGN0052423 no Drosophila_melanogaster UAUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M165_0.6 0.008018 SHEP FBGN0052423 no Drosophila_melanogaster AUAUAAA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.036962 SHEP FBGN0052423 no Drosophila_melanogaster UUAUAAA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.012125 SHEP FBGN0052423 no Drosophila_melanogaster AUAUUAA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.076833 SHEP FBGN0052423 no Drosophila_melanogaster UUAUUAA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.025204 SHEP FBGN0052423 no Drosophila_melanogaster AUAUAUA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.050732 SHEP FBGN0052423 no Drosophila_melanogaster UUAUAUA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.016642 SHEP FBGN0052423 no Drosophila_melanogaster AUAUUUA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.105458** SHEP FBGN0052423 no Drosophila_melanogaster UUAUUUA 7 RNAcompete C 23846655 RNAcompete RRM M166_0.6 0.034594 SM FBGN0003435 no Drosophila_melanogaster ACACACA 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.219398** SM FBGN0003435 no Drosophila_melanogaster AUACACA 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.070488 SM FBGN0003435 no Drosophila_melanogaster AGACACA 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.072408 SM FBGN0003435 no Drosophila_melanogaster ACACACC 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.053115 SM FBGN0003435 no Drosophila_melanogaster AUACACC 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.017065 SM FBGN0003435 no Drosophila_melanogaster AGACACC 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.01753 SM FBGN0003435 no Drosophila_melanogaster ACACACG 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.052507 SM FBGN0003435 no Drosophila_melanogaster AUACACG 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.01687 SM FBGN0003435 no Drosophila_melanogaster AGACACG 7 RNAcompete C 23846655 RNAcompete RRM M067_0.6 0.017329 SMP_067420 SMP_067420 no Schistosoma_mansoni AAAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.025254 SMP_067420 SMP_067420 no Schistosoma_mansoni UAAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.013403 SMP_067420 SMP_067420 no Schistosoma_mansoni GAAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.007317 SMP_067420 SMP_067420 no Schistosoma_mansoni AUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.062058 SMP_067420 SMP_067420 no Schistosoma_mansoni UUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.032936 SMP_067420 SMP_067420 no Schistosoma_mansoni GUAUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.017981 SMP_067420 SMP_067420 no Schistosoma_mansoni AAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.063882 SMP_067420 SMP_067420 no Schistosoma_mansoni UAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.033905 SMP_067420 SMP_067420 no Schistosoma_mansoni GAUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.01851 SMP_067420 SMP_067420 no Schistosoma_mansoni AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.156978** SMP_067420 SMP_067420 no Schistosoma_mansoni UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.083314 SMP_067420 SMP_067420 no Schistosoma_mansoni GUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M201_0.6 0.045484 SNF FBGN0003449 no Drosophila_melanogaster UAGCAC 6 RNAcompete C 23846655 RNAcompete RRM M136_0.6 0.217054 SNF FBGN0003449 no Drosophila_melanogaster UUGCAC 6 RNAcompete C 23846655 RNAcompete RRM M136_0.6 0.582562** SNRNP-U1-70K FBGN0016978 no Drosophila_melanogaster AUCAAG 6 RNAcompete C 23846655 RNAcompete RRM M134_0.6 0.284627** SNRNP-U1-70K FBGN0016978 no Drosophila_melanogaster AUCAUG 6 RNAcompete C 23846655 RNAcompete RRM M134_0.6 0.097072 SNRNP-U1-70K FBGN0016978 no Drosophila_melanogaster AUCACG 6 RNAcompete C 23846655 RNAcompete RRM M134_0.6 0.087807 SNRNP70 ENSG00000104852 no Homo_sapiens AAUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M068_0.6 0.142525 SNRNP70 ENSG00000104852 no Homo_sapiens GAUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M068_0.6 0.246192** SNRNP70 ENSG00000104852 no Homo_sapiens AUUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M068_0.6 0.072494 SNRNP70 ENSG00000104852 no Homo_sapiens GUUCAAG 7 RNAcompete C 23846655 RNAcompete RRM M068_0.6 0.125223 SNRPA ENSG00000077312 no Homo_sapiens AGGAGAU 7 SELEX C 10094314 SELEX RRM M348_0.6 0.174821** SNRPA ENSG00000077312 no Homo_sapiens AUUGCAC 7 SELEX C 1717938 SELEX RRM M319_0.6 0.889091** SNRPA ENSG00000077312 no Homo_sapiens AUUGCAC 7 X-RAY DIFFRACTION PDB 7984237 X-RAY DIFFRACTION RRM 518 1.000000** SNRPA ENSG00000077312 no Homo_sapiens AUUGCACC 8 SOLUTION NMR PDB 9312034 SOLUTION NMR RRM 346 1.000000** SNRPA ENSG00000077312 no Homo_sapiens GAGCAGUAGGC 11 SELEX C 10094314 SELEX RRM M347_0.6 0.05671 SNRPA ENSG00000077312 no Homo_sapiens GAGCAGUAGUC 11 SELEX C 10094314 SELEX RRM M347_0.6 0.050483 SNRPA ENSG00000077312 no Homo_sapiens GAGCAGUAGGG 11 SELEX C 10094314 SELEX RRM M347_0.6 0.087786** SNRPA ENSG00000077312 no Homo_sapiens GAGCAGUAGUG 11 SELEX C 10094314 SELEX RRM M347_0.6 0.078148 SNRPA ENSG00000077312 no Homo_sapiens GGGUAUGCUG 10 SELEX C 10094314 SELEX RRM M346_0.6 0.142501** SNRPA ENSG00000077312 no Homo_sapiens GAUACCUGCUA 11 SELEX C 10094314 SELEX RRM M345_0.6 0.034984 SNRPA ENSG00000077312 no Homo_sapiens GUUACCUGCUA 11 SELEX C 10094314 SELEX RRM M345_0.6 0.022283 SNRPA ENSG00000077312 no Homo_sapiens GAUUCCUGCUA 11 SELEX C 10094314 SELEX RRM M345_0.6 0.067868** SNRPA ENSG00000077312 no Homo_sapiens GUUUCCUGCUA 11 SELEX C 10094314 SELEX RRM M345_0.6 0.043228 SNRPA ENSG00000077312 no Homo_sapiens AUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M069_0.6 0.130708 SNRPA ENSG00000077312 no Homo_sapiens UUGCACA 7 RNAcompete C 23846655 RNAcompete RRM M069_0.6 0.284438** SNRPA ENSG00000077312 no Homo_sapiens AUGCACG 7 RNAcompete C 23846655 RNAcompete RRM M069_0.6 0.05396 SNRPA ENSG00000077312 no Homo_sapiens UUGCACG 7 RNAcompete C 23846655 RNAcompete RRM M069_0.6 0.117426 SNRPB2 ENSG00000125870 no Homo_sapiens GUAUUGCAGU 10 X-RAY DIFFRACTION PDB 9716128 X-RAY DIFFRACTION RRM 504 1.000000** SRP14 ENSG00000140319 no Homo_sapiens CCUGU 5 X-RAY DIFFRACTION PDB 11089964 X-RAY DIFFRACTION SRP14 342 1.000000** SRP14 ENSG00000140319 no Homo_sapiens CGCCUGUAG 9 X-RAY DIFFRACTION PDB 11089964 X-RAY DIFFRACTION SRP14 445 1.000000** SRP14 ENSG00000140319 no Homo_sapiens GUGG 4 X-RAY DIFFRACTION PDB 11089964 X-RAY DIFFRACTION SRP14 344 1.000000** SRP19 ENSG00000153037 no Homo_sapiens CCUC 4 X-RAY DIFFRACTION PDB 20179341 X-RAY DIFFRACTION SRP19 402 1.000000** SRP19 ENSG00000153037 no Homo_sapiens GAGC 4 X-RAY DIFFRACTION PDB 11641499 X-RAY DIFFRACTION SRP19 540 1.000000** SRP19 ENSG00000153037 no Homo_sapiens GGAGC 5 X-RAY DIFFRACTION PDB 20179341 X-RAY DIFFRACTION SRP19 547 1.000000** SRP19 ENSG00000153037 no Homo_sapiens UCGG 4 X-RAY DIFFRACTION PDB 20179341 X-RAY DIFFRACTION SRP19 471 1.000000** SRP54 ENSG00000100883 no Homo_sapiens AGGU 4 X-RAY DIFFRACTION PDB 12244299 X-RAY DIFFRACTION SRP54,SRP_SPB 408 1.000000** SRP54 ENSG00000100883 no Homo_sapiens CCUC 4 X-RAY DIFFRACTION PDB 12244299 X-RAY DIFFRACTION SRP54,SRP_SPB 566 1.000000** SRP54 ENSG00000100883 no Homo_sapiens GGAGC 5 X-RAY DIFFRACTION PDB 12244299 X-RAY DIFFRACTION SRP54,SRP_SPB 456 1.000000** SRP54 ENSG00000100883 no Homo_sapiens UCGG 4 X-RAY DIFFRACTION PDB 12244299 X-RAY DIFFRACTION SRP54,SRP_SPB 510 1.000000** SRP68 ENSG00000167881 no Homo_sapiens CCUC 4 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 493 1.000000** SRP68 ENSG00000167881 no Homo_sapiens CUAAG 5 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 347 1.000000** SRP68 ENSG00000167881 no Homo_sapiens GGAGC 5 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 363 1.000000** SRP68 ENSG00000167881 no Homo_sapiens UAAG 4 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 573 1.000000** SRP68 ENSG00000167881 no Homo_sapiens UCGG 4 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 501 1.000000** SRP68 ENSG00000167881 no Homo_sapiens UGCUG 5 X-RAY DIFFRACTION PDB 24700861 X-RAY DIFFRACTION SRP68 570 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens AAAAGAGAAG 10 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1230 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens AAAGAAGAA 9 EMSA, UV crosslink competition, and immunoprecipitation in HeLa nuclear extracts. S 11278454 EMSA;UV cross-linking;other RRM 1239 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens AACACGA 7 EMSA with recombinant protein. S 15302913 EMSA RRM 1240 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens AAGGUG 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 1229 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens ACAAGGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.004237 SRSF1 ENSG00000136450 no Homo_sapiens ACGCGAG 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.007886 SRSF1 ENSG00000136450 no Homo_sapiens ACGCGCA 7 SELEX C 7543047 SELEX RRM M273_0.6 0.298666** SRSF1 ENSG00000136450 no Homo_sapiens ACGCGCA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.070578** SRSF1 ENSG00000136450 no Homo_sapiens ACGCGCC 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.035348 SRSF1 ENSG00000136450 no Homo_sapiens ACGCGCG 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.023604 SRSF1 ENSG00000136450 no Homo_sapiens ACGCGCU 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.011861 SRSF1 ENSG00000136450 no Homo_sapiens ACGCUCA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.008899 SRSF1 ENSG00000136450 no Homo_sapiens AGAAGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.075554** SRSF1 ENSG00000136450 no Homo_sapiens AGAAGAGC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.010118 SRSF1 ENSG00000136450 no Homo_sapiens AGAAGGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.067169 SRSF1 ENSG00000136450 no Homo_sapiens AGACAGAGAC 10 Competition assay, UV crosslink, immunoprecipitation with HeLa nuclear extracts, EMSA and supershift assays. S 12419255 UV cross-linking;EMSA RRM 1214 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens AGAGCAGG 8 UV cross-linking and immunoprecipitation with HeLa nuclear extract S 9826658 UV cross-linking RRM 1212 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens AGAGGAAGGCGA 12 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 1226 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens AGAUGGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.016834 SRSF1 ENSG00000136450 no Homo_sapiens AGCGAGC 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s99 0.000033 SRSF1 ENSG00000136450 no Homo_sapiens AGGAAAGACC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.000256 SRSF1 ENSG00000136450 no Homo_sapiens AGGACAGAGC 10 SELEX C 7543047 SELEX RRM M351_0.6 0.063814** SRSF1 ENSG00000136450 no Homo_sapiens AGGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.067837** SRSF1 ENSG00000136450 no Homo_sapiens AGGACGAAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.009069 SRSF1 ENSG00000136450 no Homo_sapiens AGGACGACGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.000482 SRSF1 ENSG00000136450 no Homo_sapiens AGGACGGAAC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.009069 SRSF1 ENSG00000136450 no Homo_sapiens AGGACUGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.011353 SRSF1 ENSG00000136450 no Homo_sapiens AGGAGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.01084 SRSF1 ENSG00000136450 no Homo_sapiens AGGAGGA 7 Competition assay in HeLa nuclear extract. S 10629063 other RRM 1234 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens AGGAGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.001709 SRSF1 ENSG00000136450 no Homo_sapiens AGGAGGAU 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.00129 SRSF1 ENSG00000136450 no Homo_sapiens AGGAGGUAAC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.000034 SRSF1 ENSG00000136450 no Homo_sapiens AGGACA 6 RNAcompete C 23846655 RNAcompete RRM M106_0.6 0.367575** SRSF1 ENSG00000136450 no Homo_sapiens AGGAGA 6 RNAcompete C 23846655 RNAcompete RRM M106_0.6 0.096607 SRSF1 ENSG00000136450 no Homo_sapiens AGGACC 6 RNAcompete C 23846655 RNAcompete RRM M106_0.6 0.10647 SRSF1 ENSG00000136450 no Homo_sapiens AGGAGC 6 RNAcompete C 23846655 RNAcompete RRM M106_0.6 0.027983 SRSF1 ENSG00000136450 no Homo_sapiens AUGACAGAAC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.009071 SRSF1 ENSG00000136450 no Homo_sapiens AUGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.033953 SRSF1 ENSG00000136450 no Homo_sapiens AUGACUGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.005682 SRSF1 ENSG00000136450 no Homo_sapiens CAACCGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000196 SRSF1 ENSG00000136450 no Homo_sapiens CACACGA 7 NMR R 17668007 NMR RRM 17 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens CACACGA 7 UV cross-linking, Chemical shift mapping (NMR) with recombinant protein. S 17668007 UV cross-linking;SOLUTION NMR RRM 1241 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens CACAGCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000958 SRSF1 ENSG00000136450 no Homo_sapiens CACAGCG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000479 SRSF1 ENSG00000136450 no Homo_sapiens CACAGUG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.001064 SRSF1 ENSG00000136450 no Homo_sapiens CACGGAC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000299 SRSF1 ENSG00000136450 no Homo_sapiens CAGACAA 7 UV crosslink, immunoprecipitation, SDS-PAGE. S 11925564 UV cross-linking RRM 1228 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens CAGACAG 7 Mutagenesis, splicing assays, EMSA, Immunoblot. S 18315555 other;EMSA RRM 1224 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens CAGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.01021 SRSF1 ENSG00000136450 no Homo_sapiens CAGACGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.011189 SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.030481** SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.020329 SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGU 7 Competition assay in HeLa nuclear extract. S 10629063 other RRM 1235 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.015253 SRSF1 ENSG00000136450 no Homo_sapiens CAGCGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.010172 SRSF1 ENSG00000136450 no Homo_sapiens CAGCGGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.006784 SRSF1 ENSG00000136450 no Homo_sapiens CAGUCGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000084 SRSF1 ENSG00000136450 no Homo_sapiens CCAACCC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000773 SRSF1 ENSG00000136450 no Homo_sapiens CCAACCG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.001351 SRSF1 ENSG00000136450 no Homo_sapiens CCAACGC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000913 SRSF1 ENSG00000136450 no Homo_sapiens CCAAUGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.00018 SRSF1 ENSG00000136450 no Homo_sapiens CCACAGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.002553 SRSF1 ENSG00000136450 no Homo_sapiens CCACGCU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.002161 SRSF1 ENSG00000136450 no Homo_sapiens CCACGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.00892 SRSF1 ENSG00000136450 no Homo_sapiens CCACUGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.001915 SRSF1 ENSG00000136450 no Homo_sapiens CCAUGGU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000274 SRSF1 ENSG00000136450 no Homo_sapiens CCCAGCC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.002592 SRSF1 ENSG00000136450 no Homo_sapiens CCCAUGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.004591 SRSF1 ENSG00000136450 no Homo_sapiens CCCCGAC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000875 SRSF1 ENSG00000136450 no Homo_sapiens CCCCGCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.009057 SRSF1 ENSG00000136450 no Homo_sapiens CCCCGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.010703** SRSF1 ENSG00000136450 no Homo_sapiens CCCGACU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000338 SRSF1 ENSG00000136450 no Homo_sapiens CCCGUUU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000046 SRSF1 ENSG00000136450 no Homo_sapiens CCCUGAC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000172 SRSF1 ENSG00000136450 no Homo_sapiens CCCUGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.001954 SRSF1 ENSG00000136450 no Homo_sapiens CCGACAG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000295 SRSF1 ENSG00000136450 no Homo_sapiens CCGACCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000789 SRSF1 ENSG00000136450 no Homo_sapiens CCGACGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000717 SRSF1 ENSG00000136450 no Homo_sapiens CCGAGCG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.001475 SRSF1 ENSG00000136450 no Homo_sapiens CCGAUGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.002297 SRSF1 ENSG00000136450 no Homo_sapiens CCGCGCA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.011861 SRSF1 ENSG00000136450 no Homo_sapiens CCGCGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.002287 SRSF1 ENSG00000136450 no Homo_sapiens CCGCUAU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000203 SRSF1 ENSG00000136450 no Homo_sapiens CCGGACG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000396 SRSF1 ENSG00000136450 no Homo_sapiens CCUAGGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000207 SRSF1 ENSG00000136450 no Homo_sapiens CCUCGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.0009 SRSF1 ENSG00000136450 no Homo_sapiens CGAAGGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.009678 SRSF1 ENSG00000136450 no Homo_sapiens CGACGCG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.001393 SRSF1 ENSG00000136450 no Homo_sapiens CGACGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.003289 SRSF1 ENSG00000136450 no Homo_sapiens CGAGCGG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000268 SRSF1 ENSG00000136450 no Homo_sapiens CGAGCGG 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s99 0.000259 SRSF1 ENSG00000136450 no Homo_sapiens CGAGGCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.002456 SRSF1 ENSG00000136450 no Homo_sapiens CGAUGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000821 SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGG 7 Competition assay in HeLa nuclear extract. S 10629063 other RRM 1236 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.012711 SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGU 7 Competition assay in HeLa nuclear extract. S 10629063 other RRM 1237 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.009537 SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.003741** SRSF1 ENSG00000136450 no Homo_sapiens CGCCGUA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000751 SRSF1 ENSG00000136450 no Homo_sapiens CGCGCAA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.001434 SRSF1 ENSG00000136450 no Homo_sapiens CGCGCCC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000671 SRSF1 ENSG00000136450 no Homo_sapiens CGCGGAA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.003274 SRSF1 ENSG00000136450 no Homo_sapiens CGCGGAC 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.001192 SRSF1 ENSG00000136450 no Homo_sapiens CGCGGAG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000277 SRSF1 ENSG00000136450 no Homo_sapiens CGCGGUU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000342 SRSF1 ENSG00000136450 no Homo_sapiens CGCGUCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000652 SRSF1 ENSG00000136450 no Homo_sapiens CGCUCGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.00156 SRSF1 ENSG00000136450 no Homo_sapiens CGGAAGA 7 Mutagenesis, splicing assays, EMSA, Immunoblot. S 18315555 other;EMSA RRM 1223 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens CGGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.020399 SRSF1 ENSG00000136450 no Homo_sapiens CGGACGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.022358 SRSF1 ENSG00000136450 no Homo_sapiens CGGACGAAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.002727 SRSF1 ENSG00000136450 no Homo_sapiens CGGACGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.014912 SRSF1 ENSG00000136450 no Homo_sapiens CGGAGCG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.001608 SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.001975 SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.015253 SRSF1 ENSG00000136450 no Homo_sapiens CGGCACA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000422 SRSF1 ENSG00000136450 no Homo_sapiens CGGCAGA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000565 SRSF1 ENSG00000136450 no Homo_sapiens CGGCCGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.007461 SRSF1 ENSG00000136450 no Homo_sapiens CGGCGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.010172 SRSF1 ENSG00000136450 no Homo_sapiens CCAACCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGAACCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCCACCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCACCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCACCCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGACCCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCCCCCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCCCCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCAAGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGAAGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCCAGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCAGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCACGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGACGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCCCGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCCGCA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCAACGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGAACGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCCACGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCACGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCACCGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGACCGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCCCCGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCCCGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCAAGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGAAGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCCAGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCACGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGACGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCCCGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGA 7 SELEX R 16825284 SELEX RRM 126 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CCCACCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCACCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGACCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGACCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCUCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCUCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGUCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGUCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCCCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCCCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGCCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGCCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCGCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCGCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGGCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGGCCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCAGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCAGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGAGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGAGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCUGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCUGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGUGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGUGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCCGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCCGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGCGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGCGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCGGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCGGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGGGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGGGCA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCACGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCACGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGACGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGACGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCUCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCUCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGUCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGUCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCCCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCCCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGCCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGCCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCGCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCGCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGGCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGGCGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCAGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGAGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCUGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCUGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGUGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGUGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCCGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGCGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGCGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCGGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCGGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGGGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGGGGA 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCACCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCACCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGACCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGACCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCUCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCUCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGUCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGUCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCCCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCCCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGCCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGCCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCGCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCGCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGGCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGGCCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCAGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCAGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGAGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGAGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCUGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCUGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGUGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGUGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCCGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCCGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGCGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGCGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCGGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCGGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGGGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGGGCG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCACGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCACGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGACGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGACGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCUCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCUCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGUCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGUCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCCCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCCCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGCCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGCCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCGCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCGCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGGCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGGCGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCAGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGAGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCUGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCUGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGUGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGUGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCCGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGCGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGCGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCCGGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGCGGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CCGGGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CGGGGGG 7 SELEX R 16825284 SELEX RRM 167 0.007806** SRSF1 ENSG00000136450 no Homo_sapiens CUACGAA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000256 SRSF1 ENSG00000136450 no Homo_sapiens CUCAGGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.003473 SRSF1 ENSG00000136450 no Homo_sapiens CUCCGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.002316 SRSF1 ENSG00000136450 no Homo_sapiens CUCGUGU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000036 SRSF1 ENSG00000136450 no Homo_sapiens CUGAACA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s49 0.000069 SRSF1 ENSG00000136450 no Homo_sapiens CUGACUA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.000682 SRSF1 ENSG00000136450 no Homo_sapiens GAAGAA 6 CLIP-seq C 19116412 genome-wide in vivo immunoprecipitation RRM 40 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAAGAAGA 8 UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts S 14729981 UV cross-linking;other RRM 1225 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAAGAAGAA 9 Competition assay, UV crosslink, immunoprecipitation with HeLa nuclear extracts, EMSA and supershift assays. S 12419255 UV cross-linking;EMSA RRM 1215 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAAGAAGAA 9 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 1227 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GACAGGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.004947 SRSF1 ENSG00000136450 no Homo_sapiens GACCCGG 7 Competition assay in HeLa nuclear extract. S 10629063 other RRM 1238 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GACCCGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.001211 SRSF1 ENSG00000136450 no Homo_sapiens GACGAAC 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.000014 SRSF1 ENSG00000136450 no Homo_sapiens GACUGGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.000828 SRSF1 ENSG00000136450 no Homo_sapiens GAGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.01021 SRSF1 ENSG00000136450 no Homo_sapiens GAGACGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.008703 SRSF1 ENSG00000136450 no Homo_sapiens GAGCGAG 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s99 0.000574 SRSF1 ENSG00000136450 no Homo_sapiens GAGCGGA 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s99 0.000574 SRSF1 ENSG00000136450 no Homo_sapiens GAGGAAC 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.000149 SRSF1 ENSG00000136450 no Homo_sapiens GAGGAAGAA 9 UV crosslink, competition assay, immunoprecipitation S 7651409 UV cross-linking RRM 1213 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAGGAGGA 8 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1231 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAUACGAAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.000073 SRSF1 ENSG00000136450 no Homo_sapiens GAUGAAGAG 9 UV crosslink, immunoprecipitation. S 10523623 UV cross-linking RRM 1211 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GCCCACU 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000017 SRSF1 ENSG00000136450 no Homo_sapiens GCCGGAG 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.000197 SRSF1 ENSG00000136450 no Homo_sapiens GCGAGCG 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s99 0.00086 SRSF1 ENSG00000136450 no Homo_sapiens GCGCGCA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.035348 SRSF1 ENSG00000136450 no Homo_sapiens GGAAAGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.004152 SRSF1 ENSG00000136450 no Homo_sapiens GGAACAGC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.000625 SRSF1 ENSG00000136450 no Homo_sapiens GGAAUGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.004152 SRSF1 ENSG00000136450 no Homo_sapiens GGACGAAU 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.000729 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGA 6 RNAcompete C 23846655 RNAcompete RRM M103_0.6 0.463029** SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.005447 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAC 7 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1232 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAG 7 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1233 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GGACGAA 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.037896 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.131858 SRSF1 ENSG00000136450 no Homo_sapiens GGACGGA 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.02509 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.087301 SRSF1 ENSG00000136450 no Homo_sapiens GGACGAC 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.02001 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAC 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.069624 SRSF1 ENSG00000136450 no Homo_sapiens GGACGGC 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.013248 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGGC 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.046097 SRSF1 ENSG00000136450 no Homo_sapiens GGACGAG 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.038634 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.134427** SRSF1 ENSG00000136450 no Homo_sapiens GGACGGG 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.025579 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGGG 7 RNAcompete C 23846655 RNAcompete RRM M104_0.6 0.089002 SRSF1 ENSG00000136450 no Homo_sapiens GGAUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 1222 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GGAUGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.016234 SRSF1 ENSG00000136450 no Homo_sapiens GGCACGG 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.003629 SRSF1 ENSG00000136450 no Homo_sapiens GGGACGU 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.004355 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.056703 SRSF1 ENSG00000136450 no Homo_sapiens GGGGGAA 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.024908 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAC 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.062425 SRSF1 ENSG00000136450 no Homo_sapiens GGGGGAC 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.027421 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.146899** SRSF1 ENSG00000136450 no Homo_sapiens GGGGGAG 7 RNAcompete C 23846655 RNAcompete RRM M154_0.6 0.064527 SRSF1 ENSG00000136450 no Homo_sapiens GAAGGA 6 RNAcompete C 23846655 RNAcompete RRM M102_0.6 0.123105 SRSF1 ENSG00000136450 no Homo_sapiens GGAGGA 6 RNAcompete C 23846655 RNAcompete RRM M102_0.6 0.335093** SRSF1 ENSG00000136450 no Homo_sapiens GUGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.01021 SRSF1 ENSG00000136450 no Homo_sapiens GUGACGA 7 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: SRSASGA. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s50 0.00317 SRSF1 ENSG00000136450 no Homo_sapiens AGAAGAAC 8 SELEX C 7543047 SELEX RRM M272_0.6 0.108860** SRSF1 ENSG00000136450 no Homo_sapiens GGAAGAAC 8 SELEX C 7543047 SELEX RRM M272_0.6 0.059378 SRSF1 ENSG00000136450 no Homo_sapiens UAGACAGAAC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.003634 SRSF1 ENSG00000136450 no Homo_sapiens UAGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.013601 SRSF1 ENSG00000136450 no Homo_sapiens UAUUACGGAAU 11 RNA interference. S 19111562 other RRM 1217 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens UCGCACA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.00887 SRSF1 ENSG00000136450 no Homo_sapiens UCGGGCA 7 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s51 0.007886 SRSF1 ENSG00000136450 no Homo_sapiens UGAACCA 7 Functional SELEX of random 7nt and 14nt with recombinant protein. Consensus motifs: CSScSSR and CSMMSSA. S 16825284 SELEX RRM s48 0.00003 SRSF1 ENSG00000136450 no Homo_sapiens UGAAGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.032442 SRSF1 ENSG00000136450 no Homo_sapiens UGAAGGAC 8 SOLUTION NMR PDB 23836656 SOLUTION NMR RRM 375 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens UGAUGAAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.008131 SRSF1 ENSG00000136450 no Homo_sapiens UGGAAAG 7 Mutational analysis and pull-down assay and immunoblot with HeLa nuclear extract. S 17144911 other RRM 1216 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens UGGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.027176 SRSF1 ENSG00000136450 no Homo_sapiens UGAAGAA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGAGAA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAUGAA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGUGAA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAAGCA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGAGCA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAUGCA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGUGCA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAAGGA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGAGGA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAUGGA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGUGGA 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAAGAU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGAGAU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAUGAU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGUGAU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAAGCU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGAGCU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAUGCU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGUGCU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAAGGU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGAGGU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAUGGU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGUGGU 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAAGAC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGAGAC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAUGAC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGUGAC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAAGCC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGAGCC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAUGCC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGUGCC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAAGGC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGAGGC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGAUGGC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGGUGGC 7 genome-wide in vivo immunoprecipitation AEDB 18841201 genome-wide in vivo immunoprecipitation RRM 325 0.027732** SRSF1 ENSG00000136450 no Homo_sapiens UGUAGGAC 8 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s60 0.002079 SRSF1 ENSG00000136450 no Homo_sapiens UUGACAGAGC 10 SELEX of random 20nt with recombinant protein. Consensus motifs: RGAAGAAC, ACGCGCA and AGGACAGAGC. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s22 0.013601 SRSF1 ENSG00000136450 yes Homo_sapiens GCAUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 1218 1.000000** SRSF1 ENSG00000136450 yes Homo_sapiens GGAUAU 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 1221 1.000000** SRSF1 ENSG00000136450 yes Homo_sapiens GGAUUC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 1219 1.000000** SRSF1 ENSG00000136450 yes Homo_sapiens GGGUAC 6 Mutagenesis, western blot, siRNA knockdown S 19910374 other RRM 1220 1.000000** SRSF10 ENSG00000188529 no Homo_sapiens AAAAGAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s104 0.080107 SRSF10 ENSG00000188529 no Homo_sapiens AAAGAAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s104 0.179644** SRSF10 ENSG00000188529 no Homo_sapiens AAAGAAG 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s104 0.045247 SRSF10 ENSG00000188529 no Homo_sapiens AAAGACAAA 9 EMSA and RNase protection assay with recombinant protein. S 18794844 EMSA RRM 1262 1.000000** SRSF10 ENSG00000188529 no Homo_sapiens ACAAAGACAAA 11 SELEX of random 20nt with recombinant protein with mitotic phase HeLa extracts, Western Blot. Consensus motif: ACAAAGACAAA. S 12419250 SELEX RRM s98 1.000000** SRSF10 ENSG00000188529 no Homo_sapiens AGACAA 6 EMSA R 18794844 EMSA RRM 147 1.000000** SRSF10 ENSG00000188529 no Homo_sapiens AGACAA 6 EMSA and RNase protection assay with recombinant protein. S 18794844 EMSA RRM 1259 1.000000** SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s104 0.045247 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M087_0.6 0.148236** SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M087_0.6 0.111486 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAG 7 RNAcompete C 23846655 RNAcompete RRM M087_0.6 0.090172 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M087_0.6 0.067817 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.176277** SRSF10 ENSG00000188529 no Homo_sapiens AGAGACA 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.063339 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.06158 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAC 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.086105 SRSF10 ENSG00000188529 no Homo_sapiens AGAGACC 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.030939 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGC 7 RNAcompete C 23846655 RNAcompete RRM M019_0.6 0.03008 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.227285** SRSF10 ENSG00000188529 no Homo_sapiens AGAGACA 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.121921 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.07567 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAC 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.09587 SRSF10 ENSG00000188529 no Homo_sapiens AGAGACC 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.051427 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGC 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.031918 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAG 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.075601 SRSF10 ENSG00000188529 no Homo_sapiens AGAGACG 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.040554 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M088_0.6 0.02517 SRSF10 ENSG00000188529 no Homo_sapiens AAAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.01354 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.033047 SRSF10 ENSG00000188529 no Homo_sapiens AAAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.005547 SRSF10 ENSG00000188529 no Homo_sapiens AGAGGAA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.01354 SRSF10 ENSG00000188529 no Homo_sapiens AAAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.025854 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.063103 SRSF10 ENSG00000188529 no Homo_sapiens AAAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.010593 SRSF10 ENSG00000188529 no Homo_sapiens AGAGGGA 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.025854 SRSF10 ENSG00000188529 no Homo_sapiens AAAGAAG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.020493 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAAG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.050018 SRSF10 ENSG00000188529 no Homo_sapiens AAAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.008396 SRSF10 ENSG00000188529 no Homo_sapiens AGAGGAG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.020493 SRSF10 ENSG00000188529 no Homo_sapiens AAAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.039131 SRSF10 ENSG00000188529 no Homo_sapiens AGAGAGG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.095509** SRSF10 ENSG00000188529 no Homo_sapiens AAAGGGG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.016032 SRSF10 ENSG00000188529 no Homo_sapiens AGAGGGG 7 RNAcompete C 23846655 RNAcompete RRM M086_0.6 0.039131 SRSF10 ENSG00000188529 no Homo_sapiens GAAAGAA 7 RNAcompete using recombinant protein S 19561594 RNAcompete RRM s104 0.020177 SRSF10 ENSG00000188529 no Homo_sapiens GACAAA 6 EMSA R 18794844 EMSA RRM 163 1.000000** SRSF10 ENSG00000188529 no Homo_sapiens GACAAA 6 EMSA and RNase protection assay with recombinant protein. S 18794844 EMSA RRM 1260 1.000000** SRSF11 ENSG00000116754 no Homo_sapiens AAGAAG 6 Positive clones identified by fluorescence-activated cell sorting and visual inspection. Confirmed by UV crosslink, immunoprecipitation, SDS-PAGE. S 16943417 other RRM 1266 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens AAAAGAGAAG 10 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1180 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens AAGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.033246 SRSF2 ENSG00000161547 no Homo_sapiens AAGCAGUAGUC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.023103 SRSF2 ENSG00000161547 no Homo_sapiens ACGAGAG 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.015781 SRSF2 ENSG00000161547 no Homo_sapiens ACGAGAGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.001624 SRSF2 ENSG00000161547 no Homo_sapiens ACGAGAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.055036 SRSF2 ENSG00000161547 no Homo_sapiens AGAAGCGGA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.000173 SRSF2 ENSG00000161547 no Homo_sapiens AGAGAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.000997 SRSF2 ENSG00000161547 no Homo_sapiens AGAGGAAGGCGA 12 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 1177 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens AGCAGAGAU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.012317 SRSF2 ENSG00000161547 no Homo_sapiens AGCAGAGGA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.010275 SRSF2 ENSG00000161547 no Homo_sapiens AGCAGAGUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.037583** SRSF2 ENSG00000161547 no Homo_sapiens AGCAGAGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.022565 SRSF2 ENSG00000161547 no Homo_sapiens AGCAGUGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.006028 SRSF2 ENSG00000161547 no Homo_sapiens AGCCCCCA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000208 SRSF2 ENSG00000161547 no Homo_sapiens AGCCGAGAA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.005138 SRSF2 ENSG00000161547 no Homo_sapiens AGCCUCAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.0002 SRSF2 ENSG00000161547 no Homo_sapiens AGCGGAGAA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.001294 SRSF2 ENSG00000161547 no Homo_sapiens AGCUCCCA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000166 SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAA 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.021102 SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAAUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.009972 SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAAUG 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.002998 SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAG 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.041995 SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAGGU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.00925 SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.146459** SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAUAA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.001826 SRSF2 ENSG00000161547 no Homo_sapiens AGGAGCGUG 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.002269 SRSF2 ENSG00000161547 no Homo_sapiens AGGAGGA 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.001922 SRSF2 ENSG00000161547 no Homo_sapiens AGGAGUAUC 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.000535 SRSF2 ENSG00000161547 no Homo_sapiens AGGAGUGAC 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.00165 SRSF2 ENSG00000161547 no Homo_sapiens AGGCAGU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.000462 SRSF2 ENSG00000161547 no Homo_sapiens AGGCAGUAGUC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.01388 SRSF2 ENSG00000161547 no Homo_sapiens AGGCGAGCA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.001295 SRSF2 ENSG00000161547 no Homo_sapiens AGGCGAGUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.014114 SRSF2 ENSG00000161547 no Homo_sapiens AGGCGUGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.002264 SRSF2 ENSG00000161547 no Homo_sapiens AGGGUAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.00207 SRSF2 ENSG00000161547 no Homo_sapiens AGCAGAGUA 9 SELEX C 7543047 SELEX RRM M352_0.6 0.045158 SRSF2 ENSG00000161547 no Homo_sapiens AGGAGAGUA 9 SELEX C 7543047 SELEX RRM M352_0.6 0.047943** SRSF2 ENSG00000161547 no Homo_sapiens AGUAG 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM 1163 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens AGUCGAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.003708 SRSF2 ENSG00000161547 no Homo_sapiens AGUUCCAGCC 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.00075 SRSF2 ENSG00000161547 no Homo_sapiens AGUUCCAGGG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.00075 SRSF2 ENSG00000161547 no Homo_sapiens AUGAAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.00068 SRSF2 ENSG00000161547 no Homo_sapiens CAGAGGU 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.002298 SRSF2 ENSG00000161547 no Homo_sapiens CAGUAGA 7 RNA Affinity Chromatography Assays, SDS-PAGE in HeLa cell nuclear extracts, Nuclear Extract Depletion by high affinity RNA. SDS-PAGE, immunoblotting, RNA Footprinting Analysis. S 14703516 RNA affinity chromatography/purification RRM 1170 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens CGAACGAGAU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.000045 SRSF2 ENSG00000161547 no Homo_sapiens CGCAGGG 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.014274** SRSF2 ENSG00000161547 no Homo_sapiens CGCAGGU 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.014274** SRSF2 ENSG00000161547 no Homo_sapiens CGCCCUUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000068 SRSF2 ENSG00000161547 no Homo_sapiens CGCUGCUA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000145 SRSF2 ENSG00000161547 no Homo_sapiens CGGAGAGAA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.001634 SRSF2 ENSG00000161547 no Homo_sapiens CGUGAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.001493 SRSF2 ENSG00000161547 no Homo_sapiens CUAGACUAGA 10 RNA Affinity Chromatography Assays, SDS-PAGE in HeLa cell nuclear extracts, Nuclear Extract Depletion by high affinity RNA. SDS-PAGE, immunoblotting, RNA Footprinting Analysis. S 14703516 RNA affinity chromatography/purification RRM 1169 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GAAGAAGA 8 UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts S 14729981 UV cross-linking;other RRM 1174 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GAAGAAGAA 9 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 1178 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GAAUACCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000267 SRSF2 ENSG00000161547 no Homo_sapiens GACCCGG 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.001083 SRSF2 ENSG00000161547 no Homo_sapiens GACCGGUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001566 SRSF2 ENSG00000161547 no Homo_sapiens GACCUGCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000553 SRSF2 ENSG00000161547 no Homo_sapiens GACGGAGUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.000841 SRSF2 ENSG00000161547 no Homo_sapiens GACUAGAA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000159 SRSF2 ENSG00000161547 no Homo_sapiens GACUCAAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000349 SRSF2 ENSG00000161547 no Homo_sapiens GAGCACUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000095 SRSF2 ENSG00000161547 no Homo_sapiens GAGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.077427** SRSF2 ENSG00000161547 no Homo_sapiens GAGCAGUAGUC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.053805 SRSF2 ENSG00000161547 no Homo_sapiens GAGCAGUGGUC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.005429 SRSF2 ENSG00000161547 no Homo_sapiens GAGGAG 6 Competition assays with recombinant protein S 16990281 other RRM 1171 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GAGGAGGA 8 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1181 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GAUCCCCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001032 SRSF2 ENSG00000161547 no Homo_sapiens GAUCGCUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001349 SRSF2 ENSG00000161547 no Homo_sapiens GAUGAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.001357 SRSF2 ENSG00000161547 no Homo_sapiens GAUGGAGGA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.00334 SRSF2 ENSG00000161547 no Homo_sapiens GAUUAGUG 8 UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot. S 11779509 UV cross-linking RRM 1168 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCAGCUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.013722 SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCCU 8 Mutagenesis, splicing assays, EMSA, Immunoblot. S 19843576 other;EMSA RRM 1173 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCUGCUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.0103 SRSF2 ENSG00000161547 no Homo_sapiens GAUUGAUG 8 Mutagenesis, splicing assays, EMSA, Immunoblot. S 19843576 other;EMSA RRM 1172 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GCGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.031064 SRSF2 ENSG00000161547 no Homo_sapiens GCGCAGUAGUC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.021586 SRSF2 ENSG00000161547 no Homo_sapiens GCUCGAGUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.013354 SRSF2 ENSG00000161547 no Homo_sapiens GGAACCAGCUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.008244 SRSF2 ENSG00000161547 no Homo_sapiens GGACCGUA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000681 SRSF2 ENSG00000161547 no Homo_sapiens GGACGCUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.002226 SRSF2 ENSG00000161547 no Homo_sapiens GGACUGUA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000314 SRSF2 ENSG00000161547 no Homo_sapiens GGAGGA 6 UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts. S 12612063 UV cross-linking;other RRM 1179 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GGAGGAC 7 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1182 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GGAGGAG 7 UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts. S 9848651 UV cross-linking;EMSA RRM 1183 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GGAGAA 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.152691 SRSF2 ENSG00000161547 no Homo_sapiens GGAGUA 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.077519 SRSF2 ENSG00000161547 no Homo_sapiens GGAGAU 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.144765 SRSF2 ENSG00000161547 no Homo_sapiens GGAGUU 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.073495 SRSF2 ENSG00000161547 no Homo_sapiens GGAGAG 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.195196** SRSF2 ENSG00000161547 no Homo_sapiens GGAGUG 6 RNAcompete C 23846655 RNAcompete RRM M070_0.6 0.099098 SRSF2 ENSG00000161547 no Homo_sapiens GGAUCCGG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000137 SRSF2 ENSG00000161547 no Homo_sapiens GGAUGGAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000513 SRSF2 ENSG00000161547 no Homo_sapiens GGCCAAA 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.000544 SRSF2 ENSG00000161547 no Homo_sapiens GGCCCACA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000577 SRSF2 ENSG00000161547 no Homo_sapiens GGCCCCUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.009151** SRSF2 ENSG00000161547 no Homo_sapiens GGCCGCAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.003316 SRSF2 ENSG00000161547 no Homo_sapiens GGCCUCC 7 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s52 0.000273 SRSF2 ENSG00000161547 no Homo_sapiens GGCUCCAA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001327 SRSF2 ENSG00000161547 no Homo_sapiens GGCUCGUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.004476 SRSF2 ENSG00000161547 no Homo_sapiens GGCUGAUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001567 SRSF2 ENSG00000161547 no Homo_sapiens GGGAAUGCCG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.006742 SRSF2 ENSG00000161547 no Homo_sapiens GGGAAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.036928 SRSF2 ENSG00000161547 no Homo_sapiens GGGAGCC 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.000298 SRSF2 ENSG00000161547 no Homo_sapiens GGGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.046518 SRSF2 ENSG00000161547 no Homo_sapiens GGGUAAGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.028731 SRSF2 ENSG00000161547 no Homo_sapiens GGGUACGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.009641 SRSF2 ENSG00000161547 no Homo_sapiens GGGUAGGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.009641 SRSF2 ENSG00000161547 no Homo_sapiens GGGUAUGCCG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.0157 SRSF2 ENSG00000161547 no Homo_sapiens GGGUAUGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.086001** SRSF2 ENSG00000161547 no Homo_sapiens GGGUGAGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.00223 SRSF2 ENSG00000161547 no Homo_sapiens GGUCAGUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001587 SRSF2 ENSG00000161547 no Homo_sapiens GGUCGCCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.002182 SRSF2 ENSG00000161547 no Homo_sapiens GGUGAUGCGU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.000105 SRSF2 ENSG00000161547 no Homo_sapiens GGUUAAUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000578 SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCAGAU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.012123 SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCAGUU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.006935 SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCUGUUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.006188 SRSF2 ENSG00000161547 no Homo_sapiens GGUUGGCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.001067 SRSF2 ENSG00000161547 no Homo_sapiens GGUUGUUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000331 SRSF2 ENSG00000161547 no Homo_sapiens GUAACCAGCUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.016447** SRSF2 ENSG00000161547 no Homo_sapiens GUACGAGGA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.005853 SRSF2 ENSG00000161547 no Homo_sapiens GUAUCCCGCUA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.004143 SRSF2 ENSG00000161547 no Homo_sapiens GUCCCCUG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.002499 SRSF2 ENSG00000161547 no Homo_sapiens GUCCUCAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000544 SRSF2 ENSG00000161547 no Homo_sapiens GUCCUCCG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000679 SRSF2 ENSG00000161547 no Homo_sapiens GUCUAACG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000176 SRSF2 ENSG00000161547 no Homo_sapiens GUGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.015609 SRSF2 ENSG00000161547 no Homo_sapiens GUUACCAGUCC 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.000398 SRSF2 ENSG00000161547 no Homo_sapiens GUUACGUGUAA 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s56 0.000299 SRSF2 ENSG00000161547 no Homo_sapiens GUUCCAGAU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.005353 SRSF2 ENSG00000161547 no Homo_sapiens GUUCCAGGU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.015954 SRSF2 ENSG00000161547 no Homo_sapiens GUUCCAGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.031854 SRSF2 ENSG00000161547 no Homo_sapiens GUUCGAGUA 9 SELEX C 7543047 SELEX RRM M274_0.6 0.151544** SRSF2 ENSG00000161547 no Homo_sapiens GUUCGAGUA 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.092685** SRSF2 ENSG00000161547 no Homo_sapiens GUUCGAGUG 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.018685 SRSF2 ENSG00000161547 no Homo_sapiens GUUCGAGUU 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s47 0.074185 SRSF2 ENSG00000161547 no Homo_sapiens GUUCUGUA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000143 SRSF2 ENSG00000161547 no Homo_sapiens GUUUCGAG 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000303 SRSF2 ENSG00000161547 no Homo_sapiens UCCAGU 6 SOLUTION NMR PDB 22002536 SOLUTION NMR RRM 439 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens UCGAGAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.013811 SRSF2 ENSG00000161547 no Homo_sapiens UCGUAAGCUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s57 0.000266 SRSF2 ENSG00000161547 no Homo_sapiens UGAUCGAGUA 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.002036 SRSF2 ENSG00000161547 no Homo_sapiens UGCAGAGUG 9 SELEX of random 20nt with recombinant protein. Consensus motifs: AGSAGAGUA and GUUCGAGUA. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract. S 7543047 SELEX RRM s46 0.0006 SRSF2 ENSG00000161547 no Homo_sapiens UGCCGCC 7 SELEX winner confermed by immublotting in HeLa nuclear extracts. S 10022858 SELEX RRM s37 0.245122** SRSF2 ENSG00000161547 no Homo_sapiens UGCGGUC 7 SELEX winner confermed by immublotting in HeLa nuclear extracts. S 10022858 SELEX RRM s37 0.245122** SRSF2 ENSG00000161547 no Homo_sapiens UGCUGUU 7 UV crosslink and SDS-PAGE with HeLa S100 and nuclear extracts. S 9858550 UV cross-linking RRM 1176 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens UGGAGAU 7 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s53 0.036752 SRSF2 ENSG00000161547 no Homo_sapiens UGGAGU 6 SOLUTION NMR PDB 22002536 SOLUTION NMR RRM 502 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens UGGCAGUAGGG 11 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s55 0.006702 SRSF2 ENSG00000161547 no Homo_sapiens UGUUACUA 8 Functional SELEX of constructs with 20nt random by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35. Consensus motif: GRYYcSYR. S 10629063 SELEX RRM s59 0.000027 SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGAA 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.034537 SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGAU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.060374** SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGCU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.025924 SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGUG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.01483 SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCGGAU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.004687 SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGAGAA 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.023037 SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGAGAU 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.040272 SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGAGUA 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.013178 SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGUGCG 10 SELEX of 20-nt random with recombinant protein. Consensus motif: UGUUCSAGWU, GWUWCCUGCUA, GGGUAUGCUG, GAGCAGUAGKS and AGGAGAU. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s58 0.000576 SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGAU 10 SELEX C 10094314 SELEX RRM M332_0.6 0.115706** SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGAGAU 10 SELEX C 10094314 SELEX RRM M332_0.6 0.097547 SRSF2 ENSG00000161547 no Homo_sapiens UGUUCCAGUU 10 SELEX C 10094314 SELEX RRM M332_0.6 0.05445 SRSF2 ENSG00000161547 no Homo_sapiens UGUUCGAGUU 10 SELEX C 10094314 SELEX RRM M332_0.6 0.045904 SRSF2 ENSG00000161547 yes Homo_sapiens AGAAG 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM 1160 1.000000** SRSF2 ENSG00000161547 yes Homo_sapiens AGCAG 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM 1161 1.000000** SRSF2 ENSG00000161547 yes Homo_sapiens AGCUGUU 7 UV crosslink and SDS-PAGE with HeLa S100 and nuclear extracts. S 9858550 UV cross-linking RRM 1175 1.000000** SRSF2 ENSG00000161547 yes Homo_sapiens AGGAG 5 RNA affinity chromatography assay and immunoblot. S 11847131 RNA affinity chromatography/purification RRM 1162 1.000000** SRSF2 ENSG00000161547 yes Homo_sapiens AUCCCGUG 8 UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot. S 11779509 UV cross-linking RRM 1164 1.000000** SRSF2 ENSG00000161547 yes Homo_sapiens CACCUCCG 8 UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot. S 11779509 UV cross-linking RRM 1165 1.000000** SRSF2 ENSG00000161547 yes Homo_sapiens GAAUCCCG 8 UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot. S 11779509 UV cross-linking RRM 1166 1.000000** SRSF2 ENSG00000161547 yes Homo_sapiens GUAAGUACGC 10 RNA Affinity Chromatography Assays, SDS-PAGE in HeLa cell nuclear extracts, Nuclear Extract Depletion by high affinity RNA. SDS-PAGE, immunoblotting, RNA Footprinting Analysis. S 14703516 RNA affinity chromatography/purification RRM 1167 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens AACUUUAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.002188 SRSF3 ENSG00000112081 no Homo_sapiens ACAUCAUCU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.000338 SRSF3 ENSG00000112081 no Homo_sapiens ACAUCGACU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.037441 SRSF3 ENSG00000112081 no Homo_sapiens ACAUCGAUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.038719 SRSF3 ENSG00000112081 no Homo_sapiens ACAUCGAUU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.060812** SRSF3 ENSG00000112081 no Homo_sapiens ACAUCGCUU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.007635 SRSF3 ENSG00000112081 no Homo_sapiens ACAUCGUUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.007279 SRSF3 ENSG00000112081 no Homo_sapiens ACAUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.000245 SRSF3 ENSG00000112081 no Homo_sapiens ACUACGACG 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.00027 SRSF3 ENSG00000112081 no Homo_sapiens ACUACGAUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.003047 SRSF3 ENSG00000112081 no Homo_sapiens ACUUCGACU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.008826 SRSF3 ENSG00000112081 no Homo_sapiens AUCAUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.009267 SRSF3 ENSG00000112081 no Homo_sapiens AUCUUCAC 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.017362 SRSF3 ENSG00000112081 no Homo_sapiens AUCUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.034689 SRSF3 ENSG00000112081 no Homo_sapiens CACAUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.012505 SRSF3 ENSG00000112081 no Homo_sapiens CACUACAC 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.001391 SRSF3 ENSG00000112081 no Homo_sapiens CACUUCAG 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.004723 SRSF3 ENSG00000112081 no Homo_sapiens CACUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.046808** SRSF3 ENSG00000112081 no Homo_sapiens CAUC 4 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1253 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens CAUCAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.038284 SRSF3 ENSG00000112081 no Homo_sapiens CAUCAU 6 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1249 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens CCUCGUCC 8 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1245 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens CCUCGUCC 8 SELEX winner confermed by immublotting in Hela nuclear extracts. S 10022858 SELEX RRM s81 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens CCUCUUCC 8 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1244 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens CGAUCGACU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.000201 SRSF3 ENSG00000112081 no Homo_sapiens CGCUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.005247 SRSF3 ENSG00000112081 no Homo_sapiens CUACAAA 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.012587 SRSF3 ENSG00000112081 no Homo_sapiens CUACAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.124753** SRSF3 ENSG00000112081 no Homo_sapiens CUACAAU 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.012587 SRSF3 ENSG00000112081 no Homo_sapiens CUACAGC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.011444 SRSF3 ENSG00000112081 no Homo_sapiens CUACGAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.02505 SRSF3 ENSG00000112081 no Homo_sapiens CUCUUCAC 8 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1246 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens CUCUUCAC 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.020827 SRSF3 ENSG00000112081 no Homo_sapiens CUUCAAC 7 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1247 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens CUUCAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.08916 SRSF3 ENSG00000112081 no Homo_sapiens CUUCAC 6 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1250 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens GACUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.015655 SRSF3 ENSG00000112081 no Homo_sapiens GACUUCUU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.000878 SRSF3 ENSG00000112081 no Homo_sapiens GAUC 4 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1254 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens GAUCAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.005516 SRSF3 ENSG00000112081 no Homo_sapiens UACAUCAC 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.006259 SRSF3 ENSG00000112081 no Homo_sapiens UACUUCAA 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.014075 SRSF3 ENSG00000112081 no Homo_sapiens UAUCAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.0219 SRSF3 ENSG00000112081 no Homo_sapiens UCAACGACU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.015271 SRSF3 ENSG00000112081 no Homo_sapiens UCAACGAUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.015792 SRSF3 ENSG00000112081 no Homo_sapiens UCAACGAUU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.024803 SRSF3 ENSG00000112081 no Homo_sapiens UCACAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.010282 SRSF3 ENSG00000112081 no Homo_sapiens UCAGAGAUU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.00024 SRSF3 ENSG00000112081 no Homo_sapiens UCAUC 5 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1251 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGACA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.008353 SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGACU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.045752 SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGAUA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.013566 SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGAUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.047313 SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGCUU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.00933 SRSF3 ENSG00000112081 no Homo_sapiens UCAUCGUUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.008895 SRSF3 ENSG00000112081 no Homo_sapiens UCUUCAC 7 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1248 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens UCUUCGAUC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s41 0.011154 SRSF3 ENSG00000112081 no Homo_sapiens UGUCAAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.007349 SRSF3 ENSG00000112081 no Homo_sapiens UUACGAC 7 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s39 0.01433 SRSF3 ENSG00000112081 no Homo_sapiens UUCAC 5 NMR spectroscopy S 17036044 SOLUTION NMR RRM 1252 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens UUCAUCAC 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.005564 SRSF3 ENSG00000112081 no Homo_sapiens UUCUCCAA 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.000743 SRSF3 ENSG00000112081 no Homo_sapiens UUCUUCAA 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.012513 SRSF3 ENSG00000112081 no Homo_sapiens UUCUUCAU 8 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s40 0.041613 SRSF3 ENSG00000112081 no Homo_sapiens UUCUUCAUCC 10 In vivo splicing with deletion and mutation analysis. RNA pulldown assay in HeLa nuclear extracts. S 24321384 other RRM 1255 1.000000** SRSF4 ENSG00000116350 no Homo_sapiens GAAGAAGA 8 UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts S 14729981 UV cross-linking;other RRM 1275 1.000000** SRSF4 ENSG00000116350 no Homo_sapiens GAGGAAGAA 9 UV crosslink, competition assay, immunoprecipitation S 7651409 UV cross-linking RRM 1274 1.000000** SRSF5 ENSG00000100650 no Homo_sapiens AAAGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.008385 SRSF5 ENSG00000100650 no Homo_sapiens ACACC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.014835 SRSF5 ENSG00000100650 no Homo_sapiens ACACG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.016687 SRSF5 ENSG00000100650 no Homo_sapiens ACAGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.110781 SRSF5 ENSG00000100650 no Homo_sapiens ACAGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.124611** SRSF5 ENSG00000100650 no Homo_sapiens ACCGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.027799 SRSF5 ENSG00000100650 no Homo_sapiens ACGGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.041629 SRSF5 ENSG00000100650 no Homo_sapiens ACGGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.046827 SRSF5 ENSG00000100650 no Homo_sapiens ACUGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.05546 SRSF5 ENSG00000100650 no Homo_sapiens ACUGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.062384 SRSF5 ENSG00000100650 no Homo_sapiens AGAGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.008385 SRSF5 ENSG00000100650 no Homo_sapiens AUAAAGG 7 Mutagenesis, splicing assays, EMSA, Immunoblot. S 19843576 other;EMSA RRM 1264 1.000000** SRSF5 ENSG00000100650 no Homo_sapiens GAAGAAGA 8 UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts S 14729981 UV cross-linking;other RRM 1265 1.000000** SRSF5 ENSG00000100650 no Homo_sapiens GAGGAAGAA 9 UV crosslink, competition assay, immunoprecipitation S 7651409 UV cross-linking RRM 1263 1.000000** SRSF5 ENSG00000100650 no Homo_sapiens GCAGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.030286 SRSF5 ENSG00000100650 no Homo_sapiens GCAGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.034067 SRSF5 ENSG00000100650 no Homo_sapiens GCUGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.015162 SRSF5 ENSG00000100650 no Homo_sapiens UCCGC 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.0076 SRSF5 ENSG00000100650 no Homo_sapiens UCGGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.012802 SRSF5 ENSG00000100650 no Homo_sapiens UCUGG 5 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: ACDGS. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s19 0.017055 SRSF6 ENSG00000124193 no Homo_sapiens ACCGGG 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.00513 SRSF6 ENSG00000124193 no Homo_sapiens ACCGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.026276 SRSF6 ENSG00000124193 no Homo_sapiens AGCGGA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.015339 SRSF6 ENSG00000124193 no Homo_sapiens AUCGUA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.003313 SRSF6 ENSG00000124193 no Homo_sapiens CACGGA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.005766 SRSF6 ENSG00000124193 no Homo_sapiens CCCGGC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.015345 SRSF6 ENSG00000124193 no Homo_sapiens CGCGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.019723 SRSF6 ENSG00000124193 no Homo_sapiens GAAGAAGA 8 UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts S 14729981 UV cross-linking;other RRM 1270 1.000000** SRSF6 ENSG00000124193 no Homo_sapiens GACGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.009878 SRSF6 ENSG00000124193 no Homo_sapiens GAGGAAGAA 9 UV crosslink, competition assay, immunoprecipitation S 7651409 UV cross-linking RRM 1267 1.000000** SRSF6 ENSG00000124193 no Homo_sapiens GAUCAACCUGGC 12 EMSA, UV crosslink. S 12549914 UV cross-linking;EMSA RRM 1273 1.000000** SRSF6 ENSG00000124193 no Homo_sapiens GCCGGA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.011514 SRSF6 ENSG00000124193 no Homo_sapiens GCCGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.019723 SRSF6 ENSG00000124193 no Homo_sapiens UACGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.019723 SRSF6 ENSG00000124193 no Homo_sapiens UCCGGA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.022989 SRSF6 ENSG00000124193 no Homo_sapiens UGCGGC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.03064 SRSF6 ENSG00000124193 no Homo_sapiens UGCGUA 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.029548 SRSF6 ENSG00000124193 no Homo_sapiens UGCGUC 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.039381** SRSF6 ENSG00000124193 no Homo_sapiens UGCGUG 6 Functional SELEX of constructs with 20nt random by splicing in HeLa S100 extracts complemented by recombinant protein. Consensus motif: USCGKM. UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts. S 9649504 SELEX RRM s42 0.009882 SRSF6 ENSG00000124193 no Homo_sapiens UGUGGA 6 Mutagenesis, splicing assays, EMSA, Immunoblot. S 18315555 other;EMSA RRM 1269 1.000000** SRSF6 ENSG00000124193 yes Homo_sapiens GCAGCACCUGGC 12 EMSA, UV crosslink. S 12549914 UV cross-linking;EMSA RRM 1271 1.000000** SRSF6 ENSG00000124193 yes Homo_sapiens GCUCAUCCUGGC 12 EMSA, UV crosslink. S 12549914 UV cross-linking;EMSA RRM 1272 1.000000** SRSF6 ENSG00000124193 yes Homo_sapiens UGCGGA 6 Mutagenesis, splicing assays, EMSA, Immunoblot. S 18315555 other;EMSA RRM 1268 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens AAAGGACAAA 10 S100 complementation S 10022858 other RRM 590 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens ACGAAUGAU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.000998 SRSF7 ENSG00000115875 no Homo_sapiens ACGACG 6 RNAcompete C 23846655 RNAcompete RRM M071_0.6 0.564939** SRSF7 ENSG00000115875 no Homo_sapiens ACGAGACUA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.000215 SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAGAA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.041464 SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.066293** SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAGAU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.041464 SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAGAC 9 SELEX C 10094314 SELEX RRM M353_0.6 0.095254** SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAGAU 9 SELEX C 10094314 SELEX RRM M353_0.6 0.073102 SRSF7 ENSG00000115875 no Homo_sapiens ACGAGAUCA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.001914 SRSF7 ENSG00000115875 no Homo_sapiens ACGAUAGAA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.017297 SRSF7 ENSG00000115875 no Homo_sapiens ACGAUAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.027654 SRSF7 ENSG00000115875 no Homo_sapiens ACGAUUGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.007915 SRSF7 ENSG00000115875 no Homo_sapiens ACGAUUGAU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.004951 SRSF7 ENSG00000115875 no Homo_sapiens ACUAGAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.003936 SRSF7 ENSG00000115875 no Homo_sapiens AGACGACGAC 10 SELEX C 10094314 SELEX RRM M331_0.6 0.025238 SRSF7 ENSG00000115875 no Homo_sapiens AGACUACGAC 10 SELEX C 10094314 SELEX RRM M331_0.6 0.028208 SRSF7 ENSG00000115875 no Homo_sapiens AGACGACGAU 10 SELEX C 10094314 SELEX RRM M331_0.6 0.070107 SRSF7 ENSG00000115875 no Homo_sapiens AGACUACGAU 10 SELEX C 10094314 SELEX RRM M331_0.6 0.078354** SRSF7 ENSG00000115875 no Homo_sapiens AGAGGAAGGCGA 12 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 588 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens CAGAGAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.003233 SRSF7 ENSG00000115875 no Homo_sapiens CCGAGAUCA 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.000697 SRSF7 ENSG00000115875 no Homo_sapiens CCGAGAUCU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.000697 SRSF7 ENSG00000115875 no Homo_sapiens CUCUUCAC 8 NMR spectroscopy S 17036044 SOLUTION NMR RRM 591 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens CUGAGAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.001625 SRSF7 ENSG00000115875 no Homo_sapiens GAAGAAGAA 9 UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts. S 11096110 UV cross-linking;other RRM 589 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens GACGACGAG 9 UV crosslink, immunoprecipitation. S 10523623 UV cross-linking RRM 583 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens GGACGACGA 9 SELEX winner confermed by immublotting in Hela nuclear extracts. S100 complementation. S 10022858 SELEX RRM s82 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens UAGAGAGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.002427 SRSF7 ENSG00000115875 no Homo_sapiens UCAACA 6 UV-cross link with HeLa nuclear extract S 8769651 UV cross-linking RRM 585 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens UCGAGAGAU 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.011336 SRSF7 ENSG00000115875 no Homo_sapiens UCGAUUGAC 9 SELEX of 20-nt random with recombinant protein. Consensus motifs: AGACKACGAY, ACGAGAGAY, WCAUCGAYY, YWCUUCAU and CUWCAAC. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts. S 10094314 SELEX RRM s45 0.002164 SRSF7 ENSG00000115875 no Homo_sapiens UCUCCG 6 SELEX winner confermed by immublotting in Hela nuclear extracts. S100 complementation. S 10022858 SELEX RRM s83 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens UCUUCA 6 S100 complementation S 10022858 other RRM 586 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens UCUUCA 6 UV-cross link with HeLa nuclear extract S 8769651 UV cross-linking RRM 584 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens UGGACAA 7 S100 complementation S 10022858 other RRM 587 1.000000** SRSF9 ENSG00000111786 no Homo_sapiens AAGAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.013192 SRSF9 ENSG00000111786 no Homo_sapiens ACCAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.003606 SRSF9 ENSG00000111786 no Homo_sapiens AGAAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.015588 SRSF9 ENSG00000111786 no Homo_sapiens AGCAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.046455 SRSF9 ENSG00000111786 no Homo_sapiens AGCAG 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.026574 SRSF9 ENSG00000111786 no Homo_sapiens AGGAA 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.048723 SRSF9 ENSG00000111786 no Homo_sapiens AGGAC 5 EMSA using recombinant protein. UV cross-linking in HeLa and immunoprecipitation. S 18534987 EMSA;UV cross-linking;other RRM 1258 1.000000** SRSF9 ENSG00000111786 no Homo_sapiens AGGAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.169924** SRSF9 ENSG00000111786 no Homo_sapiens AGGAG 5 EMSA using recombinant protein. UV cross-linking in HeLa and immunoprecipitation. S 18534987 EMSA;UV cross-linking;other RRM 1256 1.000000** SRSF9 ENSG00000111786 no Homo_sapiens AGGAG 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.097203 SRSF9 ENSG00000111786 no Homo_sapiens AGGAU 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.048723 SRSF9 ENSG00000111786 no Homo_sapiens AGGAC 5 SELEX C 17548433 SELEX RRM M333_0.6 0.204298** SRSF9 ENSG00000111786 no Homo_sapiens AGGAU 5 SELEX C 17548433 SELEX RRM M333_0.6 0.036053 SRSF9 ENSG00000111786 no Homo_sapiens AGGCA 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.003782 SRSF9 ENSG00000111786 no Homo_sapiens AGGAAAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.015196 SRSF9 ENSG00000111786 no Homo_sapiens AUGAAAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.004506 SRSF9 ENSG00000111786 no Homo_sapiens AGGACAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.016156 SRSF9 ENSG00000111786 no Homo_sapiens AUGACAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.00479 SRSF9 ENSG00000111786 no Homo_sapiens AGGAGAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.038646 SRSF9 ENSG00000111786 no Homo_sapiens AUGAGAA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.011459 SRSF9 ENSG00000111786 no Homo_sapiens AGGAACA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.034905 SRSF9 ENSG00000111786 no Homo_sapiens AUGAACA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.010349 SRSF9 ENSG00000111786 no Homo_sapiens AGGACCA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.037111 SRSF9 ENSG00000111786 no Homo_sapiens AUGACCA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.011003 SRSF9 ENSG00000111786 no Homo_sapiens AGGAGCA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.088771** SRSF9 ENSG00000111786 no Homo_sapiens AUGAGCA 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.02632 SRSF9 ENSG00000111786 no Homo_sapiens AGGAAAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.00429 SRSF9 ENSG00000111786 no Homo_sapiens AUGAAAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.001272 SRSF9 ENSG00000111786 no Homo_sapiens AGGACAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.004561 SRSF9 ENSG00000111786 no Homo_sapiens AUGACAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.001352 SRSF9 ENSG00000111786 no Homo_sapiens AGGAGAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.010911 SRSF9 ENSG00000111786 no Homo_sapiens AUGAGAG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.003235 SRSF9 ENSG00000111786 no Homo_sapiens AGGAACG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.009854 SRSF9 ENSG00000111786 no Homo_sapiens AUGAACG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.002922 SRSF9 ENSG00000111786 no Homo_sapiens AGGACCG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.010477 SRSF9 ENSG00000111786 no Homo_sapiens AUGACCG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.003106 SRSF9 ENSG00000111786 no Homo_sapiens AGGAGCG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.025062 SRSF9 ENSG00000111786 no Homo_sapiens AUGAGCG 7 RNAcompete C 23846655 RNAcompete RRM M072_0.6 0.007431 SRSF9 ENSG00000111786 no Homo_sapiens CGGAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.051096 SRSF9 ENSG00000111786 no Homo_sapiens CGGAG 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.029229 SRSF9 ENSG00000111786 no Homo_sapiens CGGUG 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.002269 SRSF9 ENSG00000111786 no Homo_sapiens CUGGAUU 7 RNA affinity chromatography, mutation analysis and EMSA with HeLa nuclear extract. S 12024014 EMSA;RNA affinity chromatography/purification RRM 1257 1.000000** SRSF9 ENSG00000111786 no Homo_sapiens GGAAGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.027063 SRSF9 ENSG00000111786 no Homo_sapiens UGAAGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.00705 SRSF9 ENSG00000111786 no Homo_sapiens GGGAGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.021057 SRSF9 ENSG00000111786 no Homo_sapiens UGGAGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.005486 SRSF9 ENSG00000111786 no Homo_sapiens GGAUGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.019984 SRSF9 ENSG00000111786 no Homo_sapiens UGAUGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.005206 SRSF9 ENSG00000111786 no Homo_sapiens GGGUGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.015549 SRSF9 ENSG00000111786 no Homo_sapiens UGGUGCA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.004051 SRSF9 ENSG00000111786 no Homo_sapiens GGAAGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.072808** SRSF9 ENSG00000111786 no Homo_sapiens UGAAGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.018967 SRSF9 ENSG00000111786 no Homo_sapiens GGGAGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.05665 SRSF9 ENSG00000111786 no Homo_sapiens UGGAGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.014758 SRSF9 ENSG00000111786 no Homo_sapiens GGAUGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.053764 SRSF9 ENSG00000111786 no Homo_sapiens UGAUGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.014006 SRSF9 ENSG00000111786 no Homo_sapiens GGGUGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.041833 SRSF9 ENSG00000111786 no Homo_sapiens UGGUGGA 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.010898 SRSF9 ENSG00000111786 no Homo_sapiens GGAAGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.009106 SRSF9 ENSG00000111786 no Homo_sapiens UGAAGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.002372 SRSF9 ENSG00000111786 no Homo_sapiens GGGAGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.007086 SRSF9 ENSG00000111786 no Homo_sapiens UGGAGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.001846 SRSF9 ENSG00000111786 no Homo_sapiens GGAUGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.006724 SRSF9 ENSG00000111786 no Homo_sapiens UGAUGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.001752 SRSF9 ENSG00000111786 no Homo_sapiens GGGUGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.005232 SRSF9 ENSG00000111786 no Homo_sapiens UGGUGCC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.001363 SRSF9 ENSG00000111786 no Homo_sapiens GGAAGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.024499 SRSF9 ENSG00000111786 no Homo_sapiens UGAAGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.006382 SRSF9 ENSG00000111786 no Homo_sapiens GGGAGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.019062 SRSF9 ENSG00000111786 no Homo_sapiens UGGAGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.004966 SRSF9 ENSG00000111786 no Homo_sapiens GGAUGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.018091 SRSF9 ENSG00000111786 no Homo_sapiens UGAUGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.004713 SRSF9 ENSG00000111786 no Homo_sapiens GGGUGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.014076 SRSF9 ENSG00000111786 no Homo_sapiens UGGUGGC 7 RNAcompete C 23846655 RNAcompete RRM M065_0.6 0.003667 SRSF9 ENSG00000111786 no Homo_sapiens UGGAC 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.034121 SRSF9 ENSG00000111786 no Homo_sapiens UGGAU 5 SELEX of 20nt random with recombinant protein. Consensus motif: AGGAC. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts. S 17548433 SELEX RRM s97 0.009784 SSB ENSG00000138385 no Homo_sapiens AUUU 4 X-RAY DIFFRACTION PDB 18547518 X-RAY DIFFRACTION LA;RRM 548 1.000000** SSB ENSG00000138385 no Homo_sapiens UGCUG 5 X-RAY DIFFRACTION PDB 16387655 X-RAY DIFFRACTION LA;RM 457 1.000000** SSB ENSG00000138385 no Homo_sapiens UGCUGUUUU 9 EMSA R 11342556 EMSA LA;RRM 58 1.000000** SSB ENSG00000138385 no Homo_sapiens UUUU 4 X-RAY DIFFRACTION PDB 18547518 X-RAY DIFFRACTION LA;RRM 521 1.000000** SU(S) FBGN0003575 no Drosophila_melanogaster UCAGUAGUCU 10 SELEX C 1714588 SELEX ZF_CCCH M279_0.6 0.019289** SUP-12 WBGENE00006321 no Caenorhabditis_elegans GUGUG 5 SOLUTION NMR PDB 25183497 SOLUTION NMR RRM 397 1.000000** SUP-12 WBGENE00006321 no Caenorhabditis_elegans GUGUGC 6 SOLUTION NMR PDB PubMed ID is not available SOLUTION NMR RRM 538 1.000000** SUP-12 WBGENE00006321 no Caenorhabditis_elegans UGUGUGCCUG 10 protein affinity purification R 15545320 protein affinity purification RRM 39 1.000000** SUP-12 WBGENE00006321 no Caenorhabditis_elegans AGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.130011 SUP-12 WBGENE00006321 no Caenorhabditis_elegans UGUGUGA 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.277147** SUP-12 WBGENE00006321 no Caenorhabditis_elegans AGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.04407 SUP-12 WBGENE00006321 no Caenorhabditis_elegans UGUGUGU 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.093946 SUP-12 WBGENE00006321 no Caenorhabditis_elegans AGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.043672 SUP-12 WBGENE00006321 no Caenorhabditis_elegans UGUGUGG 7 RNAcompete C 23846655 RNAcompete RRM M170_0.6 0.093097 SUPV3L1 ENSG00000156502 no Homo_sapiens CCGCCC 6 X-RAY DIFFRACTION PDB 22101826 X-RAY DIFFRACTION HELICASE_C;SUV3 330 1.000000** SXL FBGN0264270 no Drosophila_melanogaster GCACG 5 X-RAY DIFFRACTION PDB 25209665 X-RAY DIFFRACTION RRM 446 1.000000** SXL FBGN0264270 no Drosophila_melanogaster GUGA 4 X-RAY DIFFRACTION PDB 25209665 X-RAY DIFFRACTION RRM 475 1.000000** SXL FBGN0264270 no Drosophila_melanogaster UGUUUUUUUU 10 X-RAY DIFFRACTION PDB 10217141 X-RAY DIFFRACTION RRM 398 1.000000** SXL FBGN0264270 no Drosophila_melanogaster UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M114_0.6 0.324780** SXL FBGN0264270 no Drosophila_melanogaster UUUUUUUGAGCA 12 X-RAY DIFFRACTION PDB 25209665 X-RAY DIFFRACTION RRM 372 1.000000** SYNCRIP ENSG00000135316 no Homo_sapiens AAAAAAA 7 Competition assay using homopolymers with HeLa S10 extracts S 17074807 other RRM 1064 1.000000** SYNCRIP ENSG00000135316 no Homo_sapiens AAAAAAA 7 Competition assay using homopolymers with purified protein S 15340051 other RRM 1062 1.000000** SYNCRIP ENSG00000135316 no Homo_sapiens AAAAAAA 7 EMSA with RNA competitors using recombinant protein S 18045242 EMSA RRM 1066 1.000000** SYNCRIP ENSG00000135316 no Homo_sapiens UUUUUUU 7 Competition assay using homopolymers with HeLa S10 extracts S 17074807 other RRM 1065 1.000000** SYNCRIP ENSG00000135316 no Homo_sapiens UUUUUUU 7 Competition assay using homopolymers with purified protein S 15340051 other RRM 1063 1.000000** SYNCRIP ENSMUSG00000032423 no Mus_musculus GGCUUUUUU 9 EMSA R 11773003 EMSA RRM 158 1.000000** SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.01276 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.029887 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUAA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.005531 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUAA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.012953 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAUA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.005297 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAUA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.012407 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.002296 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.005377 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.020047 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAAU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.046953 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUAU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.008689 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUAU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.02035 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.008322 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAUU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.019491 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.003607 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.008448 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.046405 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.108687** SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUAG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.020113 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUAG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.047106 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAAUG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.019264 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAAUG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.045119 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis AAAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.008349 SYNCRIP ENSXETG00000018075 no Xenopus_tropicalis CAAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M236_0.6 0.019555 SYP FBGN0038826 no Drosophila_melanogaster CAAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.042322 SYP FBGN0038826 no Drosophila_melanogaster UAAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.038447 SYP FBGN0038826 no Drosophila_melanogaster GAAAUUA 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.089957 SYP FBGN0038826 no Drosophila_melanogaster CAAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.090386 SYP FBGN0038826 no Drosophila_melanogaster UAAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.08211 SYP FBGN0038826 no Drosophila_melanogaster GAAAUUU 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.192120** SYP FBGN0038826 no Drosophila_melanogaster CAAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.046889 SYP FBGN0038826 no Drosophila_melanogaster UAAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.042596 SYP FBGN0038826 no Drosophila_melanogaster GAAAUUG 7 RNAcompete C 23846655 RNAcompete RRM M123_0.6 0.099666 TARDBP ENSG00000120948 no Homo_sapiens GAAUGA 6 RNAcompete C 23846655 RNAcompete RRM M074_0.6 0.498721** TARDBP ENSG00000120948 no Homo_sapiens GAAUGU 6 RNAcompete C 23846655 RNAcompete RRM M074_0.6 0.121889 TARDBP ENSG00000120948 no Homo_sapiens GAAUGG 6 RNAcompete C 23846655 RNAcompete RRM M074_0.6 0.116208 TARDBP ENSG00000120948 no Homo_sapiens GUGAAUGA 8 SOLUTION NMR PDB 24240615 SOLUTION NMR RRM 541 1.000000** TARDBP ENSG00000120948 no Homo_sapiens GUUGUGC 7 Immunoprecipitation in HEK293 cells. S 19815002 other RRM 1278 1.000000** TARDBP ENSG00000120948 no Homo_sapiens UGUGUG 6 UV crosslink, SDS-PAGE, EMSA with recombinant protein. S 11470789 UV cross-linking;EMSA RRM 1279 1.000000** TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUG 8 UV crosslinking, EMSA. S 15826655 UV cross-linking;EMSA RRM 1281 1.000000** TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUGUG 10 UV crosslinking, EMSA. S 15826655 UV cross-linking;EMSA RRM 1282 1.000000** TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUGUGUG 12 UV cross-linking R 11470789 UV cross-linking RRM 178 1.000000** TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUGUGUG 12 UV crosslink, SDS-PAGE, EMSA with recombinant protein. S 11470789 UV cross-linking;EMSA RRM 1280 1.000000** TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUGUGUG 12 UV crosslinking, EMSA. S 15826655 UV cross-linking;EMSA RRM 1283 1.000000** TARDBP ENSG00000120948 no Homo_sapiens UGUGUGUGUGUG 12 filter binding assay R 19174564 other RRM 144 1.000000** TARDBP ENSG00000120948 yes Homo_sapiens GUUGUUC 7 Immunoprecipitation in HEK293 cells. S 19815002 other RRM 1277 1.000000** TARDBP ENSG00000120948 yes Homo_sapiens GUUUUGC 7 Immunoprecipitation in HEK293 cells. S 19815002 other RRM 1276 1.000000** TB11.55.0009 TB11.55.0009 no Trypanosoma_brucei ACCUG 5 X-RAY DIFFRACTION PDB 16923390 X-RAY DIFFRACTION SSDNA 364 1.000000** TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei AUUCACA 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.199289** TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei UUUCACA 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.08041 TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei CUUCACA 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.075238 TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei AUUCACG 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.119419 TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei UUUCACG 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.048184 TBG972.11.1000 TBG972.11.1000 no Trypanosoma_brucei CUUCACG 7 RNAcompete C 23846655 RNAcompete RRM M214_0.6 0.045085 TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUAGUA 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.150096 TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUUGUA 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.163068** TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUAGUU 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.138707 TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.150695 TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUAGUG 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.136159 TBG972.3.4300 TBG972.3.4300 no Trypanosoma_brucei CAUUGUG 7 RNAcompete C 23846655 RNAcompete RRM M189_0.6 0.147926 TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUGUUGC 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.020862 TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUUUUGC 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.016977 TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUGUUUC 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.007828 TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.00637 TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUGUUGU 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.076363** TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.062144 TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUGUUUU 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.028653 TBG972.6.2300 TBG972.6.2300 no Trypanosoma_brucei CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M190_0.6 0.023318 TBG972.8.6820 TBG972.8.6820 no Trypanosoma_brucei UAUACU 6 RNAcompete C 23846655 RNAcompete RRM M192_0.6 0.586555** TBG972.9.4840 TBG972.9.4840 no Trypanosoma_brucei CUUUCU 6 RNAcompete C 23846655 RNAcompete RRM M193_0.6 0.564410** TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.115172 TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AGAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.170600** TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AAAAAUA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.032087 TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AGAAAUA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.04753 TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AAAAACA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.047631 TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AGAAACA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.070553 TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AAAAAGA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.050428 TBG972.9.5210 TBG972.9.5210 no Trypanosoma_brucei AGAAAGA 7 RNAcompete C 23846655 RNAcompete RRM M216_0.6 0.074697 TERT DQ248968 no Oryzias_latipes CGAA 4 X-RAY DIFFRACTION PDB 24793650 X-RAY DIFFRACTION RVT_1;TELOMERASE_RBD 557 1.000000** TERT DQ248968 no Oryzias_latipes GCGAA 5 X-RAY DIFFRACTION PDB 24793650 X-RAY DIFFRACTION RVT_1;TELOMERASE_RBD 551 1.000000** TERT DQ248968 no Oryzias_latipes GCGGU 5 X-RAY DIFFRACTION PDB 24793650 X-RAY DIFFRACTION RVT_1;TELOMERASE_RBD 559 1.000000** THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana AACACGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.186065** THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana UACACGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.057086 THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana CACACGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.056939 THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana AACGCGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.083353 THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana UACGCGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.025573 THAPSDRAFT_1841 THAPS1841 no Thalassiosira_pseudonana CACGCGC 7 RNAcompete C 23846655 RNAcompete RRM M196_0.6 0.025507 TIA1 ENSG00000116001 no Homo_sapiens AUUC 4 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s68 0.495098** TIA1 ENSG00000116001 no Homo_sapiens AUUUA 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.093595 TIA1 ENSG00000116001 no Homo_sapiens AUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.093595 TIA1 ENSG00000116001 no Homo_sapiens AUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.093595 TIA1 ENSG00000116001 no Homo_sapiens AUUUUG 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.093595 TIA1 ENSG00000116001 no Homo_sapiens CUUC 4 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s68 0.495098** TIA1 ENSG00000116001 no Homo_sapiens CUUUA 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.140159** TIA1 ENSG00000116001 no Homo_sapiens CUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.140159** TIA1 ENSG00000116001 no Homo_sapiens CUUUG 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.093595 TIA1 ENSG00000116001 no Homo_sapiens CUUUUA 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.093595 TIA1 ENSG00000116001 no Homo_sapiens CUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.140159** TIA1 ENSG00000116001 no Homo_sapiens CUUUUG 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.140159** TIA1 ENSG00000116001 no Homo_sapiens CUUUUUA 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s11 0.124381 TIA1 ENSG00000116001 no Homo_sapiens CUUUUUC 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s11 0.247531** TIA1 ENSG00000116001 no Homo_sapiens GUUUA 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.140159** TIA1 ENSG00000116001 no Homo_sapiens GUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.140159** TIA1 ENSG00000116001 no Homo_sapiens GUUUG 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s9 0.093595 TIA1 ENSG00000116001 no Homo_sapiens GUUUUA 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.093595 TIA1 ENSG00000116001 no Homo_sapiens GUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.140159** TIA1 ENSG00000116001 no Homo_sapiens GUUUUG 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s10 0.140159** TIA1 ENSG00000116001 no Homo_sapiens GUUUUUC 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s11 0.247531** TIA1 ENSG00000116001 no Homo_sapiens GUUUUUG 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s11 0.124381 TIA1 ENSG00000116001 no Homo_sapiens GUUUUUUUUC 10 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s67 1.000000** TIA1 ENSG00000116001 no Homo_sapiens UUCUCCUUUC 10 NMR, isothermal titration calorimetry and SAXS. S 24682828 SOLUTION NMR RRM 1285 1.000000** TIA1 ENSG00000116001 no Homo_sapiens UUUUUCG 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.085039 TIA1 ENSG00000116001 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.235839** TIA1 ENSG00000116001 no Homo_sapiens UUUUUGG 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.084194 TIA1 ENSG00000116001 no Homo_sapiens UUUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.039773 TIA1 ENSG00000116001 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.110301 TIA1 ENSG00000116001 no Homo_sapiens UUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M075_0.6 0.039377 TIA1 ENSG00000116001 no Homo_sapiens UUUUUUAUUUU 11 UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts. S 17035636 UV cross-linking;EMSA;other RRM 1284 1.000000** TIA1 ENSG00000116001 no Homo_sapiens UUUUUUUUU 9 NMR, isothermal titration calorimetry and SAXS. S 24682828 SOLUTION NMR RRM 1286 1.000000** TIA1 ENSG00000116001 no Homo_sapiens AUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.078904 TIA1 ENSG00000116001 no Homo_sapiens UUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.225711** TIA1 ENSG00000116001 no Homo_sapiens AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.043889 TIA1 ENSG00000116001 no Homo_sapiens UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.125549 TIA1 ENSG00000116001 no Homo_sapiens AUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.030799 TIA1 ENSG00000116001 no Homo_sapiens UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M156_0.6 0.088104 TIAL1 ENSG00000151923 no Homo_sapiens AUUA 4 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s63 0.495098** TIAL1 ENSG00000151923 no Homo_sapiens AUUC 4 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s63 0.495098** TIAL1 ENSG00000151923 no Homo_sapiens AUUUA 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.081517 TIAL1 ENSG00000151923 no Homo_sapiens AUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.122072 TIAL1 ENSG00000151923 no Homo_sapiens AUUUUA 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.122072 TIAL1 ENSG00000151923 no Homo_sapiens AUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.182805** TIAL1 ENSG00000151923 no Homo_sapiens AUUUUG 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.122072 TIAL1 ENSG00000151923 no Homo_sapiens AUUUUUA 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.055647 TIAL1 ENSG00000151923 no Homo_sapiens AUUUUUUUC 9 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s65 0.495098** TIAL1 ENSG00000151923 no Homo_sapiens CUUUA 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.122072 TIAL1 ENSG00000151923 no Homo_sapiens CUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.182805** TIAL1 ENSG00000151923 no Homo_sapiens CUUUG 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.122072 TIAL1 ENSG00000151923 no Homo_sapiens CUUUUA 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.122072 TIAL1 ENSG00000151923 no Homo_sapiens CUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.182805** TIAL1 ENSG00000151923 no Homo_sapiens CUUUUG 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.122072 TIAL1 ENSG00000151923 no Homo_sapiens CUUUUUA 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.165840** TIAL1 ENSG00000151923 no Homo_sapiens CUUUUUC 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.165840** TIAL1 ENSG00000151923 no Homo_sapiens CUUUUUG 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.165840** TIAL1 ENSG00000151923 no Homo_sapiens CUUUUUUC 8 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s64 1.000000** TIAL1 ENSG00000151923 no Homo_sapiens GUUUC 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.122072 TIAL1 ENSG00000151923 no Homo_sapiens GUUUG 5 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s6 0.081517 TIAL1 ENSG00000151923 no Homo_sapiens GUUUUC 6 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s7 0.06134 TIAL1 ENSG00000151923 no Homo_sapiens GUUUUUC 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.110743 TIAL1 ENSG00000151923 no Homo_sapiens GUUUUUG 7 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s8 0.110743 TIAL1 ENSG00000151923 no Homo_sapiens GUUUUUUUC 9 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s65 0.495098** TIAL1 ENSG00000151923 no Homo_sapiens GUUUUUUUUG 10 SELEX of 68nt random with recombinant protein. Winners confirmed by UV cross-linking and competition assay. S 8576255 SELEX RRM s66 1.000000** TIAL1 ENSG00000151923 no Homo_sapiens UUUUAAAUUUU 11 UV cross-linking and immunoprecipitation with HeLa cytoplasmic extracts S 12356730 UV cross-linking RRM 1289 1.000000** TIAL1 ENSG00000151923 no Homo_sapiens UUUUCAGUUUU 11 UV cross-linking and immunoprecipitation with HeLa cytoplasmic extracts S 12356730 UV cross-linking RRM 1288 1.000000** TIAL1 ENSG00000151923 no Homo_sapiens UUUUUUAUUUU 11 UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts. S 17035636 UV cross-linking;EMSA;other RRM 1287 1.000000** TIAR-1 WBGENE00015943 no Caenorhabditis_elegans UUUUUU 6 RNAcompete C 23846655 RNAcompete RRM M219_0.6 0.657541** TIAR-3 WBGENE00007396 no Caenorhabditis_elegans AUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M005_0.6 0.110043 TIAR-3 WBGENE00007396 no Caenorhabditis_elegans UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M005_0.6 0.130789 TIAR-3 WBGENE00007396 no Caenorhabditis_elegans CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M005_0.6 0.279857** TLR3 ENSMUSG00000031639 no Mus_musculus AAAGG 5 X-RAY DIFFRACTION PDB 18420935 X-RAY DIFFRACTION LRR;TIR 568 1.000000** TLR3 ENSMUSG00000031639 no Mus_musculus AGAAU 5 X-RAY DIFFRACTION PDB 18420935 X-RAY DIFFRACTION LRR;TIR 479 1.000000** TLR3 ENSMUSG00000031639 no Mus_musculus CUGC 4 X-RAY DIFFRACTION PDB 18420935 X-RAY DIFFRACTION LRR;TIR 329 1.000000** TLR3 ENSMUSG00000031639 no Mus_musculus GCGC 4 X-RAY DIFFRACTION PDB 18420935 X-RAY DIFFRACTION LRR;TIR 358 1.000000** TLR3 ENSMUSG00000031639 no Mus_musculus UUCCU 5 X-RAY DIFFRACTION PDB 18420935 X-RAY DIFFRACTION LRR;TIR 468 1.000000** TRA2 FBGN0003742 no Drosophila_melanogaster CAAAA 5 SELEX R 11557340 SELEX RRM 95 1.000000** TRA2 FBGN0003742 no Drosophila_melanogaster AAAGAA 6 RNAcompete C 23846655 RNAcompete RRM M076_0.6 0.088871 TRA2 FBGN0003742 no Drosophila_melanogaster CAAGAA 6 RNAcompete C 23846655 RNAcompete RRM M076_0.6 0.086993 TRA2 FBGN0003742 no Drosophila_melanogaster GAAGAA 6 RNAcompete C 23846655 RNAcompete RRM M076_0.6 0.309391** TRA2A ENSG00000164548 no Homo_sapiens AAGAA 5 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s78 1.000000** TRA2A ENSG00000164548 no Homo_sapiens AAGAAGAA 8 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s76 1.000000** TRA2A ENSG00000164548 no Homo_sapiens AAGAAGAAGAA 11 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s77 1.000000** TRA2A ENSG00000164548 no Homo_sapiens GAAGAGGAAG 10 EMSA, UV-crosslink, immunoprecipitation, mutation assay S 12403832 UV cross-linking;EMSA RRM 1075 1.000000** TRA2B ENSG00000136527 no Homo_sapiens AAGAA 5 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s78 1.000000** TRA2B ENSG00000136527 no Homo_sapiens AAGAAC 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 1086 1.000000** TRA2B ENSG00000136527 no Homo_sapiens AAGAAG 6 NMR spectroscopy, isothermal titration calorimetry S 24692659 SOLUTION NMR RRM 1087 1.000000** TRA2B ENSG00000136527 no Homo_sapiens AAGAAG 6 Positive clones identified by fluorescence-activated cell sorting and visual inspection. Confirmed by UV crosslink, immunoprecipitation, SDS-PAGE. S 16943417 other RRM 1078 1.000000** TRA2B ENSG00000136527 no Homo_sapiens AAGAAGAA 8 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s76 1.000000** TRA2B ENSG00000136527 no Homo_sapiens AAGAAGAAGAA 11 SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. S 9546399 SELEX RRM s77 1.000000** TRA2B ENSG00000136527 no Homo_sapiens AAUAAGAAG 9 UV crosslink, Western blot, immunoprecipitation, RNA interference with HeLa and HEK293 nuclear extracts. S 12649279 UV cross-linking;other RRM 1077 1.000000** TRA2B ENSG00000136527 no Homo_sapiens AGAA 4 SOLUTION NMR PDB 20926394 SOLUTION NMR RRM 368 1.000000** TRA2B ENSG00000136527 no Homo_sapiens AGAAC 5 SOLUTION NMR PDB 21399644 SOLUTION NMR RRM 530 1.000000** TRA2B ENSG00000136527 no Homo_sapiens AGAAGGAAGG 10 UV crosslink, competition assay in HeLa S100 and nuclear extracts. Immunoblotting in C33a extracts. S 10931943 UV cross-linking;other RRM 1079 1.000000** TRA2B ENSG00000136527 no Homo_sapiens GAAAGAAG 8 Pull down assay from HEK293 nuclear extract, western blot. S 14709600 other RRM 1083 1.000000** TRA2B ENSG00000136527 no Homo_sapiens GAAAGAAU 8 Pull down assay from HEK293 nuclear extract, western blot. S 14709600 other RRM 1082 1.000000** TRA2B ENSG00000136527 no Homo_sapiens GAAGAA 6 NMR spectroscopy S 20926394 SOLUTION NMR RRM 1084 1.000000** TRA2B ENSG00000136527 no Homo_sapiens GAAGAAGGAAA 11 Pull down assay from HEK293 nuclear extract, western blot. S 14709600 other RRM 1081 1.000000** TRA2B ENSG00000136527 no Homo_sapiens GAAGGA 6 In vivo splicing with deletion and mutation analysis S 24632473 other RRM 1090 1.000000** TRA2B ENSG00000136527 no Homo_sapiens UCAAC 5 NMR spectroscopy S 20926394 SOLUTION NMR RRM 1085 1.000000** TRA2B ENSG00000136527 yes Homo_sapiens AAGAAGAAG 9 UV crosslink, Western blot, immunoprecipitation, RNA interference with HeLa and HEK293 nuclear extracts. S 12649279 UV cross-linking;other RRM 1076 1.000000** TRA2B ENSG00000136527 yes Homo_sapiens GAAUUA 6 In vivo splicing with deletion and mutation analysis S 24632473 other RRM 1091 1.000000** TUT1 ENSG00000149016 no Homo_sapiens AAAUACU 7 RNAcompete C 23846655 RNAcompete RRM M073_0.6 0.016602 TUT1 ENSG00000149016 no Homo_sapiens CAAUACU 7 RNAcompete C 23846655 RNAcompete RRM M073_0.6 0.047935 TUT1 ENSG00000149016 no Homo_sapiens AGAUACU 7 RNAcompete C 23846655 RNAcompete RRM M073_0.6 0.043804 TUT1 ENSG00000149016 no Homo_sapiens CGAUACU 7 RNAcompete C 23846655 RNAcompete RRM M073_0.6 0.126477** TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AAAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.074519 TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AUAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.063691 TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AGAAAAA 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.198764** TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AAAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.050051 TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AUAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.042778 TVAG_002940 TVAG_002940 no Trichomonas_vaginalis AGAAAAG 7 RNAcompete C 23846655 RNAcompete RRM M220_0.6 0.133501 TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UGUUUGA 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.072098 TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UUUUUGA 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.034419 TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UGUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.159480** TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UUUUUGU 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.076134 TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UGUUUGG 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.044692 TVAG_129710 TVAG_129710 no Trichomonas_vaginalis UUUUUGG 7 RNAcompete C 23846655 RNAcompete RRM M221_0.6 0.021336 TVAG_267990 TVAG_267990 no Trichomonas_vaginalis ACCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.222505** TVAG_267990 TVAG_267990 no Trichomonas_vaginalis AUCAUGA 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.095723 TVAG_267990 TVAG_267990 no Trichomonas_vaginalis ACCAUGU 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.1532 TVAG_267990 TVAG_267990 no Trichomonas_vaginalis AUCAUGU 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.065907 TVAG_267990 TVAG_267990 no Trichomonas_vaginalis ACCAUGG 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.158635 TVAG_267990 TVAG_267990 no Trichomonas_vaginalis AUCAUGG 7 RNAcompete C 23846655 RNAcompete RRM M222_0.6 0.068246 TVAG_302220 TVAG_302220 no Trichomonas_vaginalis CAAUAA 6 RNAcompete C 23846655 RNAcompete RRM M197_0.6 0.754518** TVAG_514790 TVAG_514790 no Trichomonas_vaginalis CUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M204_0.6 0.025978 TVAG_514790 TVAG_514790 no Trichomonas_vaginalis UUUUUUG 7 RNAcompete C 23846655 RNAcompete RRM M204_0.6 0.071027 TVAG_514790 TVAG_514790 no Trichomonas_vaginalis CUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M204_0.6 0.097576 TVAG_514790 TVAG_514790 no Trichomonas_vaginalis UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M204_0.6 0.266788** U2AF2 ENSG00000063244 no Homo_sapiens UUUUU 5 X-RAY DIFFRACTION PDB 16818232 X-RAY DIFFRACTION RRM 461 1.000000** U2AF2 ENSG00000063244 no Homo_sapiens UUUUUUU 7 SOLUTION NMR PDB 21753750 SOLUTION NMR RRM 465 1.000000** U2AF2 ENSG00000063244 no Homo_sapiens UUUUUCC 7 RNAcompete C 23846655 RNAcompete RRM M077_0.6 0.142738 U2AF2 ENSG00000063244 no Homo_sapiens UUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M077_0.6 0.287699** U2AF50 FBGN0005411 no Drosophila_melanogaster UUUUUCC 7 RNAcompete C 23846655 RNAcompete RRM M078_0.6 0.08035 U2AF50 FBGN0005411 no Drosophila_melanogaster UUUUUUC 7 RNAcompete C 23846655 RNAcompete RRM M078_0.6 0.200274** U2AF50 FBGN0005411 no Drosophila_melanogaster UUUUUCU 7 RNAcompete C 23846655 RNAcompete RRM M078_0.6 0.04654 U2AF50 FBGN0005411 no Drosophila_melanogaster UUUUUUU 7 RNAcompete C 23846655 RNAcompete RRM M078_0.6 0.116003 UAF-1 WBGENE00006697 no Caenorhabditis_elegans UUUUCAAA 8 UV cross-linking R 10617207 UV cross-linking RRM 92 1.000000** UAF-1 WBGENE00006697 no Caenorhabditis_elegans UUUUCAGG 8 UV cross-linking R 10617207 UV cross-linking RRM 90 1.000000** UAF-1 WBGENE00006697 no Caenorhabditis_elegans UUUUCGAA 8 UV cross-linking R 10617207 UV cross-linking RRM 80 1.000000** UAF-1 WBGENE00006697 no Caenorhabditis_elegans UUUUCGAG 8 UV cross-linking R 10617207 UV cross-linking RRM 111 1.000000** UAF-1 WBGENE00006697 no Caenorhabditis_elegans UUUUCGGG 8 UV cross-linking R 10617207 UV cross-linking RRM 26 1.000000** UAF-2 WBGENE00006698 no Caenorhabditis_elegans UUUUCAGG 8 UV cross-linking R 10617207 UV cross-linking ZF_CCCH 176 1.000000** UNC-75 WBGENE00006807 no Caenorhabditis_elegans UGUUGUA 7 RNAcompete C 23846655 RNAcompete RRM M079_0.6 0.062749 UNC-75 WBGENE00006807 no Caenorhabditis_elegans UGUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M079_0.6 0.059244 UNC-75 WBGENE00006807 no Caenorhabditis_elegans UGUUGUG 7 RNAcompete C 23846655 RNAcompete RRM M079_0.6 0.229250** VAS FBGN0262526 no Drosophila_melanogaster UUUUUU 6 X-RAY DIFFRACTION PDB 16630817 X-RAY DIFFRACTION DEAD;HELICASE_C 438 1.000000** VTS1 YOR359W no Saccharomyces_cerevisiae CUGGCA 6 SOLUTION NMR PDB 16429156 SOLUTION NMR SAM 524 1.000000** VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGCC 7 RNAcompete C 23846655 RNAcompete SAM M107_0.6 0.310866** VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGCG 7 RNAcompete C 23846655 RNAcompete SAM M107_0.6 0.101128 VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGCC 7 RNAcompete C 23846655 RNAcompete SAM M080_0.6 0.316298** VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGUC 7 RNAcompete C 23846655 RNAcompete SAM M080_0.6 0.079193 VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGCG 7 RNAcompete C 23846655 RNAcompete SAM M080_0.6 0.099823 VTS1 YOR359W no Saccharomyces_cerevisiae GCUGGUG 7 RNAcompete C 23846655 RNAcompete SAM M080_0.6 0.024993 VTS1 YOR359W no Saccharomyces_cerevisiae UCUUUGA 7 X-RAY DIFFRACTION PDB 16429151 X-RAY DIFFRACTION SAM 441 1.000000** XPO5 ENSG00000124571 no Homo_sapiens CCGC 4 X-RAY DIFFRACTION PDB 19965479 X-RAY DIFFRACTION XPO1 469 1.000000** XPO5 ENSG00000124571 no Homo_sapiens GUUU 4 X-RAY DIFFRACTION PDB 19965479 X-RAY DIFFRACTION XPO1 578 1.000000** YBX1 ENSG00000065978 no Homo_sapiens AACAUC 6 RNAcompete C 23846655 RNAcompete CSD M081_0.6 0.649623** YBX1 ENSG00000065978 no Homo_sapiens AACAUCA 7 RNAcompete C 23846655 RNAcompete CSD M111_0.6 0.295457** YBX1 ENSG00000065978 no Homo_sapiens AACAUCU 7 RNAcompete C 23846655 RNAcompete CSD M111_0.6 0.089415 YBX1 ENSG00000065978 no Homo_sapiens AACAUCG 7 RNAcompete C 23846655 RNAcompete CSD M111_0.6 0.124748 YBX1 ENSG00000065978 no Homo_sapiens ACAAC 5 UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts. S 18503770 UV cross-linking;EMSA CSD 1293 1.000000** YBX1 ENSG00000065978 no Homo_sapiens CAACCACAA 9 UV crosslink and competition assay in HeLa nuclear extracts. S 11447123 UV cross-linking CSD 1291 1.000000** YBX1 ENSG00000065978 no Homo_sapiens CAACCACACCAC 12 UV crosslink and competition assay in HeLa nuclear extracts. S 11447123 UV cross-linking CSD 1290 1.000000** YBX1 ENSG00000065978 no Homo_sapiens CACC 4 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by EMSA with recombinant protein. S 22730292 SELEX CSD s54 0.495098** YBX1 ENSG00000065978 no Homo_sapiens CAUC 4 In vivo splicing in HEK-293 cells with wt and mutated sequences, EMSA S 22730292 UV cross-linking;other CSD 1298 1.000000** YBX1 ENSG00000065978 no Homo_sapiens CAUC 4 SELEX of 20nt random sequences with recombinant protein. Winners confirmed by EMSA with recombinant protein. S 22730292 SELEX CSD s54 0.495098** YBX1 ENSG00000065978 no Homo_sapiens CAUCAUC 7 In vivo splicing in HEK-293 cells with wt and mutated sequences, UV crosslinking S 22730292 UV cross-linking;other CSD 1299 1.000000** YBX1 ENSG00000065978 no Homo_sapiens CAUCGC 6 EMSA with recombinant protein. S 22730292 UV cross-linking;other CSD 1296 1.000000** YBX1 ENSG00000065978 no Homo_sapiens CAUCUG 6 EMSA with recombinant protein. S 22730292 UV cross-linking;other CSD 1295 1.000000** YBX1 ENSG00000065978 no Homo_sapiens CCCUGCG 7 RNAcompete using recombinant protein S 19561594 RNAcompete CSD s99 0.001029 YBX1 ENSG00000065978 no Homo_sapiens CCUGCGG 7 RNAcompete using recombinant protein S 19561594 RNAcompete CSD s99 0.000687 YBX1 ENSG00000065978 no Homo_sapiens CUGCGGU 7 RNAcompete using recombinant protein S 19561594 RNAcompete CSD s99 0.000231 YBX1 ENSG00000065978 no Homo_sapiens GAUC 4 EMSA with recombinant protein. S 22730292 UV cross-linking;other CSD 1294 1.000000** YBX1 ENSG00000065978 no Homo_sapiens GAUCUG 6 EMSA with recombinant protein. S 22730292 UV cross-linking;other CSD 1297 1.000000** YBX1 ENSG00000065978 no Homo_sapiens GCCUGCG 7 RNAcompete using recombinant protein S 19561594 RNAcompete CSD s99 0.001285** YBX1 ENSG00000065978 no Homo_sapiens GGUCUGC 7 RNAcompete using recombinant protein S 19561594 RNAcompete CSD s99 0.000144 YBX1 ENSG00000065978 no Homo_sapiens UCCAGCAA 8 RNA footprinting R 15798215 other CSD 124 1.000000** YBX1 ENSG00000065978 yes Homo_sapiens AGAAC 5 UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts. S 18503770 UV cross-linking;EMSA CSD 1292 1.000000** YBX2 ENSG00000006047 no Homo_sapiens AACAACA 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.111962** YBX2 ENSG00000006047 no Homo_sapiens AACAUCA 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.088475 YBX2 ENSG00000006047 no Homo_sapiens AACAACU 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.100059 YBX2 ENSG00000006047 no Homo_sapiens AACAUCU 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.079069 YBX2 ENSG00000006047 no Homo_sapiens AACAACG 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.092417 YBX2 ENSG00000006047 no Homo_sapiens AACAUCG 7 RNAcompete C 23846655 RNAcompete CSD M082_0.6 0.07303 YBX2 ENSMUSG00000018554 no Mus_musculus AACACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UACACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CACACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus ACCACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UCCACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CCCACCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus AACAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UACAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CACAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus ACCAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UCCAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CCCAUCA 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus AACACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UACACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CACACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus ACCACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UCCACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CCCACCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus AACAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UACAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CACAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus ACCAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UCCAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CCCAUCU 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus AACACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UACACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CACACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus ACCACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UCCACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CCCACCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus AACAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UACAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CACAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus ACCAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus UCCAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2 ENSMUSG00000018554 no Mus_musculus CCCAUCC 7 EMSA R 11564883 EMSA CSD 153 0.027732** YBX2-A XB-GENE-6252609 no Xenopus_laevis GAACAUCU 8 SELEX C 7499328 SELEX CSD M254_0.6 0.027732** YBX2-A XB-GENE-6252609 no Xenopus_laevis UAACAUCU 8 SELEX C 7499328 SELEX CSD M254_0.6 0.027732** YBX2-A XB-GENE-6252609 no Xenopus_laevis GAACAUCU 8 SELEX R 7499328 SELEX CSD 115_7499328.pfm 0.027732** YBX2-A XB-GENE-6252609 no Xenopus_laevis UAACAUCU 8 SELEX R 7499328 SELEX CSD 115_7499328.pfm 0.027732** YBX2-A XB-GENE-6252609 no Xenopus_laevis UAACAUC 7 SELEX R 7499328 SELEX CSD 114_7499328.pfm 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus AACACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UACACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CACACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus ACCACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UCCACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CCCACCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus AACAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UACAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CACAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus ACCAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UCCAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CCCAUCA 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus AACACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UACACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CACACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus ACCACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UCCACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CCCACCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus AACAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UACAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CACAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus ACCAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UCCAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CCCAUCU 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus AACACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UACACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CACACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus ACCACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UCCACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CCCACCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus AACAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UACAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CACAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus ACCAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus UCCAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YBX3 ENSMUSG00000030189 no Mus_musculus CCCAUCC 7 EMSA R 11564883 EMSA CSD 113 0.027732** YTHDC1 ENSG00000083896 no Homo_sapiens GCAUGC 6 EMSA R 20167602 EMSA YTH 50 1.000000** YTHDC1 ENSG00000083896 no Homo_sapiens GAAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.027112** YTHDC1 ENSG00000083896 no Homo_sapiens UAAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.022811 YTHDC1 ENSG00000083896 no Homo_sapiens GCAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.020733 YTHDC1 ENSG00000083896 no Homo_sapiens UCAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.017444 YTHDC1 ENSG00000083896 no Homo_sapiens GGAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.007974 YTHDC1 ENSG00000083896 no Homo_sapiens UGAUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.006709 YTHDC1 ENSG00000083896 no Homo_sapiens GACUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.012652 YTHDC1 ENSG00000083896 no Homo_sapiens UACUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.010645 YTHDC1 ENSG00000083896 no Homo_sapiens GCCUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.009675 YTHDC1 ENSG00000083896 no Homo_sapiens UCCUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.00814 YTHDC1 ENSG00000083896 no Homo_sapiens GGCUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.003721 YTHDC1 ENSG00000083896 no Homo_sapiens UGCUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.003131 YTHDC1 ENSG00000083896 no Homo_sapiens GAGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.018075 YTHDC1 ENSG00000083896 no Homo_sapiens UAGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.015207 YTHDC1 ENSG00000083896 no Homo_sapiens GCGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.013822 YTHDC1 ENSG00000083896 no Homo_sapiens UCGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.011629 YTHDC1 ENSG00000083896 no Homo_sapiens GGGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.005316 YTHDC1 ENSG00000083896 no Homo_sapiens UGGUAC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.004473 YTHDC1 ENSG00000083896 no Homo_sapiens GAAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.027112** YTHDC1 ENSG00000083896 no Homo_sapiens UAAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.022811 YTHDC1 ENSG00000083896 no Homo_sapiens GCAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.020733 YTHDC1 ENSG00000083896 no Homo_sapiens UCAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.017444 YTHDC1 ENSG00000083896 no Homo_sapiens GGAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.007974 YTHDC1 ENSG00000083896 no Homo_sapiens UGAUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.006709 YTHDC1 ENSG00000083896 no Homo_sapiens GACUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.012652 YTHDC1 ENSG00000083896 no Homo_sapiens UACUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.010645 YTHDC1 ENSG00000083896 no Homo_sapiens GCCUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.009675 YTHDC1 ENSG00000083896 no Homo_sapiens UCCUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.00814 YTHDC1 ENSG00000083896 no Homo_sapiens GGCUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.003721 YTHDC1 ENSG00000083896 no Homo_sapiens UGCUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.003131 YTHDC1 ENSG00000083896 no Homo_sapiens GAGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.018075 YTHDC1 ENSG00000083896 no Homo_sapiens UAGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.015207 YTHDC1 ENSG00000083896 no Homo_sapiens GCGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.013822 YTHDC1 ENSG00000083896 no Homo_sapiens UCGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.011629 YTHDC1 ENSG00000083896 no Homo_sapiens GGGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.005316 YTHDC1 ENSG00000083896 no Homo_sapiens UGGUGC 6 SELEX C 20167602 SELEX YTH M354_0.6 0.004473 ZC3H10 ENSG00000135482 no Homo_sapiens CCAGCGA 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.025332 ZC3H10 ENSG00000135482 no Homo_sapiens GCAGCGA 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.048918 ZC3H10 ENSG00000135482 no Homo_sapiens CGAGCGA 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.010524 ZC3H10 ENSG00000135482 no Homo_sapiens GGAGCGA 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.020322 ZC3H10 ENSG00000135482 no Homo_sapiens CCAGCGC 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.065913 ZC3H10 ENSG00000135482 no Homo_sapiens GCAGCGC 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.127284** ZC3H10 ENSG00000135482 no Homo_sapiens CGAGCGC 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.027382 ZC3H10 ENSG00000135482 no Homo_sapiens GGAGCGC 7 RNAcompete C 23846655 RNAcompete ZF_CCCH M083_0.6 0.052878 ZCRB1 ENSG00000139168 no Homo_sapiens GAAUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.197321** ZCRB1 ENSG00000139168 no Homo_sapiens GGAUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.066343 ZCRB1 ENSG00000139168 no Homo_sapiens GAUUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.078808 ZCRB1 ENSG00000139168 no Homo_sapiens GGUUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.026497 ZCRB1 ENSG00000139168 no Homo_sapiens GACUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.120915 ZCRB1 ENSG00000139168 no Homo_sapiens GGCUUAA 7 RNAcompete C 23846655 RNAcompete ZF_CCHC;RRM M085_0.6 0.040654 ZFP36 ENSG00000128016 no Homo_sapiens AAAAAACAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.04524 ZFP36 ENSG00000128016 no Homo_sapiens AAUAAACAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.04524 ZFP36 ENSG00000128016 no Homo_sapiens AACAAACAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.0232 ZFP36 ENSG00000128016 no Homo_sapiens AAAAAGCAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.0312 ZFP36 ENSG00000128016 no Homo_sapiens AAUAAGCAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.0312 ZFP36 ENSG00000128016 no Homo_sapiens AACAAGCAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.016 ZFP36 ENSG00000128016 no Homo_sapiens AAAAAAUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.088218** ZFP36 ENSG00000128016 no Homo_sapiens AAUAAAUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.088218** ZFP36 ENSG00000128016 no Homo_sapiens AACAAAUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.04524 ZFP36 ENSG00000128016 no Homo_sapiens AAAAAGUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.06084 ZFP36 ENSG00000128016 no Homo_sapiens AAUAAGUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.06084 ZFP36 ENSG00000128016 no Homo_sapiens AACAAGUAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.0312 ZFP36 ENSG00000128016 no Homo_sapiens AAAAAAGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.088218** ZFP36 ENSG00000128016 no Homo_sapiens AAUAAAGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.088218** ZFP36 ENSG00000128016 no Homo_sapiens AACAAAGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.04524 ZFP36 ENSG00000128016 no Homo_sapiens AAAAAGGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.06084 ZFP36 ENSG00000128016 no Homo_sapiens AAUAAGGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.06084 ZFP36 ENSG00000128016 no Homo_sapiens AACAAGGAAAG 11 SELEX C 12324455 SELEX ZF_CCCH M269_0.6 0.0312 ZFP36 ENSG00000128016 no Homo_sapiens AAUAA 5 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 128 1.000000** ZFP36 ENSG00000128016 no Homo_sapiens AUUUA 5 RIP-chip C 18256032 genome-wide in vivo immunoprecipitation ZF_CCCH 38 1.000000** ZFP36 ENSG00000128016 no Homo_sapiens CUUGU 5 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 138 1.000000** ZFP36 ENSG00000128016 no Homo_sapiens ACCUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCCUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCCUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens ACUUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCUUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCUUCC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens ACCUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCCUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCCUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens ACUUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCUUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCUUUC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens ACCUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCCUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCCUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens ACUUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCUUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCUUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens ACCUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCCUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCCUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens ACUUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCUUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCUUCU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens ACCUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCCUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCCUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens ACUUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCUUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCUUUU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens ACCUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCCUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCCUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens ACUUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UCUUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens CCUUGU 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 155 0.027732** ZFP36 ENSG00000128016 no Homo_sapiens UUAUUUAUU 9 RIP-chip C 18256032 genome-wide in vivo immunoprecipitation ZF_CCCH 109 1.000000** ZFP36 ENSG00000128016 no Homo_sapiens UUAUUUAAA 9 SELEX C 12324455 SELEX ZF_CCCH M350_0.6 0.011906 ZFP36 ENSG00000128016 no Homo_sapiens UUAUUUAUA 9 SELEX C 12324455 SELEX ZF_CCCH M350_0.6 0.019209 ZFP36 ENSG00000128016 no Homo_sapiens UUAUUUAAU 9 SELEX C 12324455 SELEX ZF_CCCH M350_0.6 0.107158 ZFP36 ENSG00000128016 no Homo_sapiens UUAUUUAUU 9 SELEX C 12324455 SELEX ZF_CCCH M350_0.6 0.172881** ZFP36 ENSG00000128016 no Homo_sapiens UUGUGC 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 49 0.495098** ZFP36 ENSG00000128016 no Homo_sapiens UUGUGG 6 RIP-chip C 18367721 genome-wide in vivo immunoprecipitation ZF_CCCH 49 0.495098** ZFP36L2 ENSG00000152518 no Homo_sapiens UUAUUUAUU 9 NMR R 14981510 NMR ZF_CCCH 15 1.000000** ZFP36L2 ENSG00000152518 no Homo_sapiens UUAUUUAUU 9 SOLUTION NMR PDB 14981510 SOLUTION NMR ZF_CCCH 428 1.000000** ZNF346 ENSG00000113761 no Homo_sapiens CCACC 5 SOLUTION NMR PDB 24521053 SOLUTION NMR ZF_C2H2 388 1.000000** ZNF346 ENSG00000113761 no Homo_sapiens GUGGU 5 SOLUTION NMR PDB 24521053 SOLUTION NMR ZF_C2H2 481 1.000000** ZNF638 ENSG00000075292 no Homo_sapiens CGUUCGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.032334 ZNF638 ENSG00000075292 no Homo_sapiens UGUUCGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.098877** ZNF638 ENSG00000075292 no Homo_sapiens GGUUCGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.031981 ZNF638 ENSG00000075292 no Homo_sapiens CGUUGGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.021895 ZNF638 ENSG00000075292 no Homo_sapiens UGUUGGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.066954 ZNF638 ENSG00000075292 no Homo_sapiens GGUUGGU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.021656 ZNF638 ENSG00000075292 no Homo_sapiens CGUUCUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.014968 ZNF638 ENSG00000075292 no Homo_sapiens UGUUCUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.04577 ZNF638 ENSG00000075292 no Homo_sapiens GGUUCUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.014804 ZNF638 ENSG00000075292 no Homo_sapiens CGUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.010135 ZNF638 ENSG00000075292 no Homo_sapiens UGUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.030993 ZNF638 ENSG00000075292 no Homo_sapiens GGUUGUU 7 RNAcompete C 23846655 RNAcompete RRM M155_0.6 0.010024 ZRANB2 ENSG00000132485 no Homo_sapiens AGGGAA 6 Fluorescence anisotropy. S 19304800 other ZF_RANBP 1300 1.000000** ZRANB2 ENSG00000132485 no Homo_sapiens AGGUAA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. EMSA, NMR Spectroscopy. Fluorescence anisotropy. S 19304800 SELEX ZF_RANBP s21 0.134437** ZRANB2 ENSG00000132485 no Homo_sapiens AGGUAC 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. Fluorescence anisotropy. S 19304800 SELEX ZF_RANBP s21 0.033861 ZRANB2 ENSG00000132485 no Homo_sapiens AGGUAG 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.033861 ZRANB2 ENSG00000132485 no Homo_sapiens AGGUAU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.134437** ZRANB2 ENSG00000132485 no Homo_sapiens AGGUCU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.022593 ZRANB2 ENSG00000132485 no Homo_sapiens AGGUUA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. Fluorescence anisotropy. S 19304800 SELEX ZF_RANBP s21 0.06733 ZRANB2 ENSG00000132485 no Homo_sapiens AGGUUU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.06733 ZRANB2 ENSG00000132485 no Homo_sapiens CGGUAA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. Fluorescence anisotropy. S 19304800 SELEX ZF_RANBP s21 0.01937 ZRANB2 ENSG00000132485 no Homo_sapiens CGGUAG 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s20 0.071476 ZRANB2 ENSG00000132485 no Homo_sapiens CGGUAU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s20 0.142245** ZRANB2 ENSG00000132485 no Homo_sapiens CGGUCU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s20 0.04773 ZRANB2 ENSG00000132485 no Homo_sapiens GAGGUU 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.000122 ZRANB2 ENSG00000132485 no Homo_sapiens GGGUAA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s20 0.094988 ZRANB2 ENSG00000132485 no Homo_sapiens GGGUGA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s20 0.031873 ZRANB2 ENSG00000132485 no Homo_sapiens GGUAAAGGU 9 Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein S 22517726 other ZF_RANBP 1302 1.000000** ZRANB2 ENSG00000132485 no Homo_sapiens GGUGGU 6 Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein S 22517726 other ZF_RANBP 1301 1.000000** ZRANB2 ENSG00000132485 no Homo_sapiens GGUGGUGGU 9 Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein S 22517726 other ZF_RANBP 1303 1.000000** ZRANB2 ENSG00000132485 no Homo_sapiens UGGUAA 6 SELEX of 25nt random with recombinant protein. Consensus motifs: CAGGUAA and AAGGUAA. S 19304800 SELEX ZF_RANBP s21 0.01937 HNRNPA1 HNRNPA1 no Gallus_gallus GGGGA 5 Mutagenesis;UV cross-linking AEDB 15208309 UV cross-linking N/A 1304 1.000000** HNRNPA1 ENSMUSG00000046434 no Mus_musculus UAGAGU 6 splicing assays and Immunoprecipitation;UV cross-linking AEDB 9121425 other HNRNPA1;RRM 1305 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens GAGGAAGGUG 10 In vitro splicing assays;UV cross-linking AEDB 12612063 UV cross-linking HNRNPA1;RRM 1306 1.000000** SRSF5 ENSRNOG00000005513 no Rattus_norvegicus GAAGAAGAAG 10 In Vivo and In Vitro Splicing Assays;Gel mobility shift AEDB 8755518 other RRM 1307 1.000000** HNRNPH1 ENSRNOG00000003399 no Rattus_norvegicus GGAGAGAAGGGA 12 Immunoprecipitation;UV cross-linking AEDB 11421362;10753970 UV cross-linking ZF_RNPHF 1308 1.000000** TRA2B ENSG00000136527 no Homo_sapiens GAAAGAAU 8 In vivo splicing assay;Mutagenesis;In vitro binding AEDB 14709600 other RRM 1309 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens CAGACAA 7 Natural ocurring mutant AEDB 12829008 other RRM 1310 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GACCCGCA 8 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1311 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GGAAGAAC 8 In vitro splicing AEDB 19273129 other RRM 1312 1.000000** TRA2B ENSG00000136527 no Homo_sapiens GAAGAAGGAAA 11 In vivo splicing assay;Mutagenesis;In vitro binding AEDB 14709600 other RRM 1313 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens GGCUCCCCC 9 In Vitro Splicing;Uv cross-linking;HeLa cell AEDB 9826658 UV cross-linking RRM 1314 1.000000** TRA2B ENSG00000136527 no Homo_sapiens AAGAAGAAG 9 Mutagenesis;UV Cross-linking and Immunoprecipitation Assays;In Vitro Splicing Assays AEDB 10748133;12649279 UV cross-linking;other RRM 1315 1.000000** RBMX ENSG00000147274 no Homo_sapiens AAGUAACAA 9 Competition experiments AEDB 12761049 other RRM 1316 1.000000** PTBP2 ENSMUSG00000028134 no Mus_musculus CUCUC 5 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 11003644;1591778;9234723 UV cross-linking RRM 1317 1.000000** CELF2 ENSGALG00000006713 no Gallus_gallus UGUGUCCUGUG 11 Gel mobility shift and UV cross-linking AEDB 11931771;10801888;9671461 UV cross-linking RRM 1318 1.000000** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGAGGAG 9 in vitro splicing and UV crosslinking AEDB 10094307 UV cross-linking RRM 1319 1.000000** HNRNPH1 ENSMUSG00000007850 no Mus_musculus GGGGGCUG 8 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 11003644;1591778;9234723 UV cross-linking ZF_RNPHP 1320 1.000000** YBX1 ENSG00000065978 no Homo_sapiens CACCACCACC 10 In vitro splicing AEDB 19273129 other CSD 1321 1.000000** KHSRP ENSMUSG00000007670 no Mus_musculus UGCAUG 6 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 11003644;1591778;9234723 UV cross-linking KH 1322 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GGCUGCAA 8 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1323 1.000000** SRSF1 ENSMUSG00000018379 no Mus_musculus CAGACAA 7 UV crosslink; immunoprecipitation; SDS-PAGE AEDB 11925564 UV cross-linking RRM 1324 1.000000** HNRNPF ENSMUSG00000042079 no Mus_musculus GGGGGCUG 8 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 11003644;1591778;9234723 UV cross-linking RRM;ZF_RNPHP 1325 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAAGGA 6 In Vitro Splicing;Uv cross-linking;HeLa cell AEDB 8676495;12525645;9371566 UV cross-linking RRM 1326 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens UGAUGGAGA 9 Deletion analysis;EMSA and UV Cross-linking AEDB 15247216 UV cross-linking;EMSA RRM 1327 1.000000** TRA2A ENSG00000164548 no Homo_sapiens AGAAAGAAGAAA 12 other AEDB 12913074 other RRM 1328 1.000000** PURH ENSGALG00000003570 no Gallus_gallus UGUGUCCUGUG 11 Gel mobility shift and UV cross-linking AEDB 11931771;10801888;9671461 UV cross-linking MGS;AICARFT_IMPCHAS 1329 1.000000** SRSF5 ENSG00000100650 no Homo_sapiens CAACAGC 8 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1330 1.000000** HNRNPF ENSG00000169813 no Homo_sapiens GAGGAAGGUG 10 In vitro splicing assays;UV cross-linking AEDB 12612063 UV cross-linking RRM;ZF_RNPHP 1331 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens AGAGGAAGGCGA 12 In Vitro Splicing Assays;UV Cross-linking and Immunopurification Assays AEDB 11096110 UV cross-linking RRM 1332 1.000000** SRSF5 ENSG00000100650 no Homo_sapiens CCGCAGG 8 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1333 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GACCACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCCACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUCACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUCACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACUACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCUACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUUACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUUACCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACCCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCCCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUCCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUCCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACUCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCUCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCCA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACCACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCCACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUCACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUCACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACUACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCUACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUUACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUUACUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACCCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCCCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUCCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUCCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACUCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCUCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCUA 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACCACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCCACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUCACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUCACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACUACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCUACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUUACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUUACCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACCCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCCCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUCCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUCCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACUCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCUCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCCG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACCACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCCACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUCACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUCACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACUACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCUACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUUACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUUACUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACCCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCCCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUCCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUCCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GACUCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGCUCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GAUUCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF2 ENSG00000161547 no Homo_sapiens GGUUCCUG 8 SELEX AEDB 11967553 SELEX RRM 1334 0.015596** SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGC 7 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1335 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAGGAAGGUG 10 In vitro splicing assays;UV cross-linking AEDB 12612063 UV cross-linking RRM 1336 1.000000** HNRNPH1 ENSGALG00000005955 no Gallus_gallus GGGGCUG 7 Mutagenesis;UV cross-linking AEDB 15208309 UV cross-linking ZF_RNPHF 1337 1.000000** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GGAGAGAAGGGA 12 Immunoprecipitation;UV cross-linking AEDB 11421362;10753970 UV cross-linking RRM 1338 1.000000** YBX1 ENSG00000065978 no Homo_sapiens CAACCACAA 9 In vitro assays;SDS-PAGE with HeLa nuclear extracts AEDB 11447123 other CSD 1339 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UUCUUUU 7 In vivo splicing assay;Mutagenesis;UV cross-linking AEDB 14966131 UV cross-linking RRM 1340 1.000000** PTBP1 ENSRNOG00000010448 no Rattus_norvegicus UCUUCUU 7 UV cross-linking AEDB 8070413;9436911;9214659 UV cross-linking RRM 1341 1.000000** HNRNPA1 HNRNPA1 no Gallus_gallus AGGGU 5 Mutagenesis;UV cross-linking AEDB 15208309 UV cross-linking N/A 1342 1.000000** SRSF5 ENSG00000100650 no Homo_sapiens CACAGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UACAGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CGCAGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UGCAGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CACGGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UACGGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CGCGGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UGCGGA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CACAUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UACAUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CGCAUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UGCAUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CACGUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UACGUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CGCGUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UGCGUA 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CACAGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UACAGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CGCAGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UGCAGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CACGGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UACGGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CGCGGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UGCGGC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CACAUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UACAUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CGCAUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UGCAUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CACGUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UACGUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens CGCGUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF5 ENSG00000100650 no Homo_sapiens UGCGUC 6 SELEX AEDB 11967553;12824367 SELEX RRM 1343 0.031153** SRSF2 ENSG00000161547 no Homo_sapiens AGAGGAAGGCGA 12 In Vitro Splicing Assays;UV Cross-linking and Immunopurification Assays AEDB 11096110 UV cross-linking RRM 1344 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAAGGAC 7 In vitro splicing AEDB 19273129 other RRM 1345 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens CUAGACUAGA 10 Western blotting;Immunoprecipitation and cross-linking. AEDB 9858549;7565800;10406810;9016638 UV cross-linking RRM 1346 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GAGGAAGGUG 10 In vitro splicing assays;UV cross-linking AEDB 12612063 UV cross-linking ZF_RNPHP 1347 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens UGCCGUU 7 UV crosslink and SDS-PAGE with HeLa S100 and nuclear extracts AEDB 9858550 UV cross-linking RRM 1348 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GGACAA 6 UV crosslink and SDS-PAGE with HeLa S100 and nuclear extracts AEDB 9858550 UV cross-linking RRM 1349 1.000000** HNRNPH1 ENSRNOG00000003399 no Rattus_norvegicus GAGGGAG 7 Immunoprecipitation;UV cross-linking AEDB 11421362;10753970 UV cross-linking ZF_RNPHF 1350 1.000000** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAAGAAGAA 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGAAGAA 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAAGAGGAA 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGAGGAA 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAAGAAGAG 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGAAGAG 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAAGAGGAG 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGAGGAG 9 In vitro splicing assay AEDB 8036160;10094307 other RRM 1351 0.124069** SRSF2 ENSG00000161547 no Homo_sapiens GAAGAAGAA 9 In Vitro Splicing Assays;UV Cross-linking and Immunopurification Assays AEDB 11096110 UV cross-linking RRM 1352 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAAAGGAGA 9 RNA isolation and Western blot AEDB 11847131;9343212 other RRM 1353 1.000000** SRSF3 ENSG00000112081 no Homo_sapiens CACCACCACC 10 In vitro splicing AEDB 19273129 other RRM 1354 1.000000** SRSF5 ENSG00000100650 no Homo_sapiens GAGGAAGAA 9 Gel mobility shift;S100 competition assays;UV Cross-linking and Immunoprecipitation AEDB 9436904;8388541;7651409 UV cross-linking RRM 1355 1.000000** SXL FBGN0264270 no Drosophila_melanogaster UUUUUUUU 8 In vitro RNA binding AEDB 1690860;7680770;7958879 other RRM 1356 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens AGAUCC 4 In vitro splicing assays and RNA competition assays AEDB 10022872;9710624;7623851 other RRM 1357 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGACA 6 In vivo splicing assay;UV cross-linking AEDB 12833158 UV cross-linking RRM 1358 1.000000** PTBP1 ENSMUSG00000006498 no Mus_musculus CUCUCU 6 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 9234723 UV cross-linking RRM 1359 1.000000** SRSF7 ENSG00000115875 no Homo_sapiens GAAGAAGAA 9 In Vitro Splicing Assays;UV Cross-linking and Immunopurification Assays AEDB 11096110 UV cross-linking RRM 1360 1.000000** RBMX ENSG00000147274 no Homo_sapiens AAGU 4 Mutagenesis;Deletion analysis AEDB 12761049 other RRM 1361 1.000000** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAAGAAGAG 9 UV crosslinking and competition assay AEDB 10094307 UV cross-linking RRM 1362 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens UUAG 4 In vitro splicing assays and RNA competition assays AEDB 10022872;9710624;7623851 other RRM 1363 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens CUGAGUU 7 Natural ocurring mutant AEDB 12829008 other RRM 1364 1.000000** SRSF6 ENSRNOG00000006380 no Rattus_norvegicus AAGAAAAGGGA 11 Deletion analysis;UV cross-linking AEDB 12531473 UV cross-linking RRM 1365 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UUAG 4 In vitro splicing assays and RNA competition assays AEDB 10022872;9710624;7623851 other RRM 1366 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAAGGAG 7 In vitro splicing AEDB 19273129 other RRM 1367 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UUUUUCCC 8 Gel mobility shift;Mutagenesis;UV cross-linking;Competition experiments AEDB 9858533 UV cross-linking;other RRM 1368 1.000000** TRA2A ENSRNOG00000009156 no Rattus_norvegicus AAGAAAAGGGA 11 Deletion analysis;UV cross-linking AEDB 12531473 UV cross-linking RRM 1369 1.000000** PTBP2 ENSMUSG00000028134 no Mus_musculus CUCUCU 6 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 9234723 UV cross-linking RRM 1370 1.000000** HNRNPF HNRNPF no Gallus_gallus GGGGCUG 7 Mutagenesis;UV cross-linking AEDB 15208309 UV cross-linking N/A 1371 1.000000** PTBP1 ENSMUSG00000006498 no Mus_musculus CUCUC 5 Gel mobility shift and UV cross-linking Immunoprecipitation and Western blot analysis AEDB 11003644;1591778;9234723 UV cross-linking RRM 1372 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens AGAGCAGG 8 In Vitro Splicing;Uv cross-linking;HeLa cell AEDB 9826658 UV cross-linking RRM 1373 1.000000** SRSF6 ENSRNOG00000006380 no Rattus_norvegicus GGAGCACCUGGC 12 other AEDB 12549914 other RRM 1374 1.000000** TRA2B ENSG00000136527 no Homo_sapiens GAAAGAAG 8 In vivo splicing assay;Mutagenesis;In vitro binding AEDB 14709600 other RRM 1375 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens UUAAUUUCAAGA 12 In vivo splicing assay;Deletion analysis AEDB 10766763 other RRM 1376 1.000000** RBMX ENSG00000147274 no Homo_sapiens AAGUGUU 7 Mutagenesis;UV cross-linking AEDB 12761049 UV cross-linking RRM 1377 1.000000** NOVA1 ENSG00000139910 no Homo_sapiens UCAGUCAC 8 RNA affinity binding assays AEDB 15367696 other KH 1378 1.000000** PTBP1 ENSMUSG00000006498 no Mus_musculus CAGGUAAGAC 10 UV cross-linking;Competition experiments AEDB 8566754 UV cross-linking;other RRM 1379 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens UGAUGGAGA 9 Deletion analysis;EMSA and UV Cross-linking AEDB 15247216 UV cross-linking;EMSA RRM 1380 1.000000** PTBP1 ENSRNOG00000010448 no Rattus_norvegicus CUCCUCCCUC 10 UV cross-linking;immunoprecipitation and competition assays;Western blot analysis AEDB 10982855 UV cross-linking RRM 1381 1.000000** PTBP1 ENSMUSG00000006498 no Mus_musculus UUUCUCU 7 Mutagenesis;UV cross-linking AEDB 11158574;11116151 other;UV cross-linking RRM 1382 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GGAAGAAG 8 In vitro splicing AEDB 19273129 other RRM 1383 1.000000** SRSF6 ENSG00000124193 no Homo_sapiens CCACACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UCACACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CUACACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UUACACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CCUCACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UCUCACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CUUCACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UUUCACG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CCACUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UCACUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CUACUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UUACUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CCUCUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UCUCUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CUUCUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UUUCUCG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CCACAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UCACAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CUACAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UUACAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CCUCAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UCUCAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CUUCAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UUUCAGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CCACUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UCACUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CUACUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UUACUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CCUCUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UCUCUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens CUUCUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF6 ENSG00000124193 no Homo_sapiens UUUCUGG 7 SELEX AEDB 11967553;12824367 SELEX RRM 1384 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens AAGAGGA 7 in vitro splicing assays and western blotting AEDB 11825891 other RRM 1385 1.000000** RBMX ENSG00000147274 no Homo_sapiens AAGAAGGAAGG 11 In vitro splicing;In vivo splicing AEDB 11726560;12165565;10931943 other RRM 1386 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGG 4 Immunoprecipitation;UV cross-linking AEDB 15506926 UV cross-linking ZF_RNPHF 1387 1.000000** SRSF1 ENSRNOG00000050323 no Rattus_norvegicus GAGGGAG 7 Immunoprecipitation;UV cross-linking AEDB 11421362;10753970 UV cross-linking RRM 1388 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAAGAAGAA 9 In Vitro Splicing Assays;UV Cross-linking and Immunopurification Assays AEDB 11096110 UV cross-linking RRM 1389 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens GAGGAAGAA 9 Gel mobility shift;S100 competition assays;UV Cross-linking and Immunoprecipitation AEDB 9436904;8388541;7651409 UV cross-linking RRM 1390 1.000000** HNRNPH1 ENSG00000169045 no Homo_sapiens GGGA 4 snRNA inactivation in HeLa cell nuclear extract;Western blot AEDB 11847131;9343212 other ZF_RNPHF 1391 1.000000** SRSF6 ENSG00000124193 no Homo_sapiens GAGGAAGAA 9 Gel mobility shift;S100 competition assays;UV Cross-linking and Immunoprecipitation AEDB 9436904;8388541;7651409 UV cross-linking RRM 1392 1.000000** SRSF1 ENSG00000136450 no Homo_sapiens CACACGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCACGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CAGACGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGGACGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CACCCGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCCCGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CAGCCGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGGCCGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CACAGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CACCGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CAGCGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGGCGGA 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CACACGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCACGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CAGACGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGGACGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CACCCGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCCCGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CAGCCGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGGCCGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CACAGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCAGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CAGAGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGGAGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CACCGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGCCGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CAGCGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** SRSF1 ENSG00000136450 no Homo_sapiens CGGCGGU 7 SELEX AEDB 11967553;12824367 SELEX RRM 1393 0.031153** NOVA1 ENSG00000139910 no Homo_sapiens UCAC 4 RNA affinity binding assays AEDB 15367696 other KH 1394 1.000000** SRSF2 ENSG00000161547 no Homo_sapiens GAAAGGAGA 9 RNA isolation and Western blot AEDB 11847131;9343212 other RRM 1395 1.000000** HNRNPAB ENSG00000197451 no Homo_sapiens AUAGCA 6 In vitro splicing assays AEDB 12426391 other RRM 1396 1.000000** HNRNPA1 ENSG00000135486 no Homo_sapiens UAGG 4 Immunoprecipitation;UV cross-linking AEDB 15506926 UV cross-linking RRM 1397 1.000000** PTBP1 ENSG00000011304 no Homo_sapiens UUCUUC 6 In vivo splicing assay;Mutagenesis;UV cross-linking AEDB 14966131 UV cross-linking RRM 1398 1.000000**